Publications

  1. Zayas J, Ruddy KJ, Olson JE, Couch FJ, Bauer BA, Mallory MJ, Yang P, Zahrieh D, Athreya AP, Loprinzi CL, Cathcart-Rake EJ. Real-world experiences with acupuncture among breast cancer survivors: a cross-sectional survey study. Support Care Cancer. 2020 Dec; 28 (12):5833-5838 Epub 2020 Apr 06
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  2. Iyer Ravishankar, Athreya Arjun, Wang Liewei, Weinshilboum Richard. Artificial Intelligence and Pharmacogenomics: A Timely Synergy for Individualizing Medicine Advances in Molecular Pathology. 2019.
  3. Athreya AP, Neavin D, Carrillo-Roa T, Skime M, Biernacka J, Frye MA, Rush AJ, Wang L, Binder EB, Iyer RK, Weinshilboum RM, Bobo WV. Pharmacogenomics-Driven Prediction of Antidepressant Treatment Outcomes: A Machine-Learning Approach With Multi-trial Replication. Clin Pharmacol Ther. 2019 Oct; 106 (4):855-865 Epub 2019 June 29
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  4. Athreya A, Iyer R, Neavin D, Wang L, Weinshilboum R, Kaddurah-Daouk R, Rush J, Frye M, Bobo W. Augmentation of Physician Assessments with Multi-Omics Enhances Predictability of Drug Response: A Case Study of Major Depressive Disorder. IEEE Comput Intell Mag. 2018 Aug; 13 (3):20-31 Epub 2018 July 20
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  5. Athreya AP, Gaglio AJ, Cairns J, Kalari KR, Weinshilboum RM, Wang L, Kalbarczyk ZT, Iyer RK. Machine Learning Helps Identify New Drug Mechanisms in Triple-Negative Breast Cancer. IEEE Trans Nanobioscience. 2018 Jul; 17 (3):251-259 Epub 2018 July 02
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  6. Liu D, Ray B, Neavin DR, Zhang J, Athreya AP, Biernacka JM, Bobo WV, Hall-Flavin DK, Skime MK, Zhu H, Jenkins GD, Batzler A, Kalari KR, Boakye-Agyeman F, Matson WR, Bhasin SS, Mushiroda T, Nakamura Y, Kubo M, Iyer RK, Wang L, Frye MA, Kaddurah-Daouk R, Weinshilboum RM. Beta-defensin 1, aryl hydrocarbon receptor and plasma kynurenine in major depressive disorder: metabolomics-informed genomics. Transl Psychiatry. 2018 Jan 10; 8 (1):10
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  7. Athreya AP, Armstrong D, Gundling W, Wildman D, Kalbarczyk ZT, Iyer RK. Prediction of adenocarcinoma development using game theory. Conf Proc IEEE Eng Med Biol Soc. 2017 Jul; 2017:1668-1671
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  8. Athreya AP, Kalari KR, Cairns J, Gaglio AJ, Wills QF, Niu N, Weinshilboum R, Iyer RK, Wang L. Model-based unsupervised learning informs metformin-induced cell-migration inhibition through an AMPK-independent mechanism in breast cancer. Oncotarget. 2017 Apr 18; 8 (16):27199-27215
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  9. Athreya AP, Gaglio AJ, Kalbarczyk ZT, Iyer RK, Cairns J, Kalari KR, Weinshilboum RM, Wang L. Unsupervised single-cell analysis in triple-negative breast cancer: A case study Proceedings - 2016 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2016. 2017; 556-63.
  10. Athreya AP, Banerjee SS, Neavin D, Kaddurah-Daouk R, Rush AJ, Frye MA, Wang L, Weinshilboum RM, Bobo WV, Iyer RK. Data-driven longitudinal modeling and prediction of symptom dynamics in major depressive disorder: Integrating factor graphs and learning methods 2017 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, CIBCB 2017. 2017; 8058559
  11. Athreya A, Banerjee Subho, Mainzer Liudmila S, Jongeneel C Victor, Hwu Wen-Mei, Kalbarczyk Zbigniew T, Iyer Ravishankar K. Efficient and scalable workflows for genomic analyses Proceedings of the ACM International Workshop on Data-Intensive Distributed Computing. 2016; 27-36.
  12. Athreya A, DeBruhl Bruce, Tague Patrick. Designing for self-configuration and self-adaptation in the Internet of Things 9th IEEE International Conference on Collaborative Computing: Networking, Applications and Worksharing. 2013; 585-592.
  13. Athreya A, Tague Patrick. Network self-organization in the internet of things 2013 IEEE international workshop of internet-of-things networking and control (IoT-NC). 2013; 25-33.
  14. Athreya A, Tague Patrick. Self-organization of a mesh hierarchy for smart grid monitoring in outage scenarios 2013 IEEE PES Innovative Smart Grid Technologies Conference (ISGT). 2013; 1-6.
  15. Athreya A, Tague Patrick. Survivable smart grid communication: Smart-meters meshes to the rescue 2012 International Conference on Computing, Networking and Communications (ICNC). 2012.
  16. Athreya A, Tague Patrick. Towards secure multi-path routing for wireless mobile ad-hoc networks: a cross-layer strategy 2011 8th Annual IEEE Communications Society Conference on Sensor, Mesh and Ad Hoc Communications and Networks. 2011; 146-148.