Publications

  1. Song SD, Acharya KD, Zhu JE, Deveney CM, Walther-Antonio MRS, Tetel MJ, Chia N. Daily Vaginal Microbiota Fluctuations Associated with Natural Hormonal Cycle, Contraceptives, Diet, and Exercise. mSphere. 2020 Jul 8; 5 (4) Epub 2020 July 08
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  2. Shogan BD, Chen J, Duchalais E, Collins D, Chang M, Krull K, Krezalek MA, Larson DW, Walther-Antonio MR, Chia N, Nelson H. Alterations of the Rectal Microbiome Are Associated with the Development of Postoperative Ileus in Patients Undergoing Colorectal Surgery. J Gastrointest Surg. 2020 Jul; 24 (7):1663-1672 Epub 2020 Apr 22
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  3. Multinu F, Chen J, Madison JD, Torres M, Casarin J, Visscher D, Shridhar V, Bakkum-Gamez J, Sherman M, Wentzensen N, Mariani A, Walther-Antonio M. Analysis of DNA methylation in endometrial biopsies to predict risk of endometrial cancer. Gynecol Oncol. 2020 Mar; 156 (3):682-688 Epub 2020 Jan 03
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  4. Xavier JB, Young VB, Skufca J, Ginty F, Testerman T, Pearson AT, Macklin P, Mitchell A, Shmulevich I, Xie L, Caporaso JG, Crandall KA, Simone NL, Godoy-Vitorino F, Griffin TJ, Whiteson KL, Gustafson HH, Slade DJ, Schmidt TM, Walther-Antonio MRS, Korem T, Webb-Robertson BM, Styczynski MP, Johnson WE, Jobin C, Ridlon JM, Koh AY, Yu M, Kelly L, Wargo JA. The Cancer Microbiome: Distinguishing Direct and Indirect Effects Requires a Systemic View. Trends Cancer. 2020 Mar; 6 (3):192-204 Epub 2020 Feb 07
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  5. Greathouse KL, White JR, Vargas AJ, Bliskovsky VV, Beck JA, von Muhlinen N, Polley EC, Bowman ED, Khan MA, Robles AI, Cooks T, Ryan BM, Padgett N, Dzutsev AH, Trinchieri G, Pineda MA, Bilke S, Meltzer PS, Hokenstad AN, Stickrod TM, Walther-Antonio MR, Earl JP, Mell JC, Krol JE, Balashov SV, Bhat AS, Ehrlich GD, Valm A, Deming C, Conlan S, Oh J, Segre JA, Harris CC. Author Correction: Interaction between the microbiome and TP53 in human lung cancer. Genome Biol. 2020 Feb 20; 21 (1):41
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  6. Walsh DM, Hokenstad AN, Chen J, Sung J, Jenkins GD, Chia N, Nelson H, Mariani A, Walther-Antonio MRS. Postmenopause as a key factor in the composition of the Endometrial Cancer Microbiome (ECbiome). Sci Rep. 2019 Dec 16; 9 (1):19213
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  7. Liu Y, Jeraldo P, Jang JS, Eckloff B, Jen J, Walther-Antonio M. Bacterial Single Cell Whole Transcriptome Amplification in Microfluidic Platform Shows Putative Gene Expression Heterogeneity. Anal Chem. 2019 Jul 2; 91 (13):8036-8044 Epub 2019 June 12
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  8. Liu Y, Yao J, Yao JD, Walther-Antonio M. Whole genome amplification of single epithelial cells dissociated from snap-frozen tissue samples in microfluidic platform. Biomicrofluidics. 2019 May; 13 (3):034109 Epub 2019 May 15
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  9. Mert I, Walther-Antonio M, Mariani A. Case for a role of the microbiome in gynecologic cancers: Clinician's perspective. J Obstet Gynaecol Res. 2018 Sep; 44 (9):1693-1704 Epub 2018 Aug 02
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  10. Greathouse KL, White JR, Vargas AJ, Bliskovsky VV, Beck JA, von Muhlinen N, Polley EC, Bowman ED, Khan MA, Robles AI, Cooks T, Ryan BM, Padgett N, Dzutsev AH, Trinchieri G, Pineda MA, Bilke S, Meltzer PS, Hokenstad AN, Stickrod TM, Walther-Antonio MR, Earl JP, Mell JC, Krol JE, Balashov SV, Bhat AS, Ehrlich GD, Valm A, Deming C, Conlan S, Oh J, Segre JA, Harris CC. Interaction between the microbiome and TP53 in human lung cancer. Genome Biol. 2018 Aug 24; 19 (1):123
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  11. Liu Y, Schulze-Makuch D, de Vera JP, Cockell C, Leya T, Baque M, Walther-Antonio M. The Development of an Effective Bacterial Single-Cell Lysis Method Suitable for Whole Genome Amplification in Microfluidic Platforms. Micromachines (Basel). 2018 Jul 25; 9 (8) Epub 2018 July 25
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  12. Multinu F, Harrington SC, Chen J, Jeraldo PR, Johnson S, Chia N, Walther-Antonio MR. Systematic Bias Introduced by Genomic DNA Template Dilution in 16S rRNA Gene-Targeted Microbiota Profiling in Human Stool Homogenates. mSphere. 2018 Mar-Apr; 3 (2) Epub 2018 Mar 14
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  13. Liu Y, Walther-Antonio MR. Microfluidics: A new tool for microbial single cell analyses in human microbiome studies Biomicrofluidics. 2017.
  14. Thompson KJ, Ingle JN, Tang X, Chia N, Jeraldo PR, Walther-Antonio MR, Kandimalla KK, Johnson S, Yao JZ, Harrington SC, Suman VJ, Wang L, Weinshilboum RL, Boughey JC, Kocher JP, Nelson H, Goetz MP, Kalari KR. A comprehensive analysis of breast cancer microbiota and host gene expression. PLoS One. 2017; 12 (11):e0188873 Epub 2017 Nov 30
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  15. Walther-Antonio MR, Chen J, Multinu F, Hokenstad A, Distad TJ, Cheek EH, Keeney GL, Creedon DJ, Nelson H, Mariani A, Chia N. Potential contribution of the uterine microbiome in the development of endometrial cancer. Genome Med. 2016 Nov 25; 8 (1):122
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  16. Hieken TJ, Chen J, Hoskin TL, Walther-Antonio M, Johnson S, Ramaker S, Xiao J, Radisky DC, Knutson KL, Kalari KR, Yao JZ, Baddour LM, Chia N, Degnim AC. The Microbiome of Aseptically Collected Human Breast Tissue in Benign and Malignant Disease. Sci Rep. 2016 Aug 3; 6:30751 Epub 2016 Aug 03
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  17. Baldwin EA, Walther-Antonio M, MacLean AM, Gohl DM, Beckman KB, Chen J, White B, Creedon DJ, Chia N. Persistent microbial dysbiosis in preterm premature rupture of membranes from onset until delivery. PeerJ. 2015; 3:e1398 Epub 2015 Nov 26
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  18. Braundmeier AG, Lenz KM, Inman KS, Chia N, Jeraldo P, Walther-Antonio MR, Berg Miller ME, Yang F, Creedon DJ, Nelson H, White BA. Individualized medicine and the microbiome in reproductive tract. Front Physiol. 2015; 6:97 Epub 2015 Apr 01
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  19. Walther-Antonio MR, Jeraldo P, Berg Miller ME, Yeoman CJ, Nelson KE, Wilson BA, White BA, Chia N, Creedon DJ. Pregnancy's stronghold on the vaginal microbiome. PLoS One. 2014; 9 (6):e98514 Epub 2014 June 04
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  20. Schulze-Makuch D, Lim D, Laval B, Turse C, Antonio MR, Chan O, Pointing SB, Brady A, Reid D, Irwin LN. Pavilion lake microbialites: morphological, molecular and biochemical evidence for a cold-water transition to colonial aggregates. Life (Basel). 2012 Dec 27; 3 (1):21-37
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  21. Walther-Antonio M, Schulze-Makuch D. Toward a New Understanding of Multicellularity. Hypotheses in the Life Sciences. 2012; 2(1):4-14.
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  22. Schulze-Makuch D, Mendez A, Fairen AG, von Paris P, Turse C, Boyer G, Davila AF, Antonio MR, Catling D, Irwin LN. A two-tiered approach to assessing the habitability of exoplanets. Astrobiology. 2011 Dec; 11 (10):1041-52 Epub 2011 Oct 21
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  23. Schulze-Makuch D, Haque S, de Sousa Antonio MR, Ali D, Hosein R, Song YC, Yang J, Zaikova E, Beckles DM, Guinan E, Lehto HJ, Hallam SJ. Microbial life in a liquid asphalt desert. Astrobiology. 2011 Apr; 11 (3):241-58 Epub 2011 Apr 11
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  24. Antonio MR, Schulze-Makuch D. The power of social structure: how we became an intelligent lineage. International Journal of Astrobiology. 2011; 10(01):15-23.
  25. Antonio MR, Schulze-Makuch D. The immune system as key to cancer treatment: Triggering its activity with microbial agents. Bioscience Hypotheses. 2009; 2(6):388-392.