Publications

  1. Chan V, Gausper A, Liu A, Andras LM, Illingworth KD, Skaggs DL, Imbeault R, Dufresne J, Parent S, Deschenes S, Roy-Beaudry M, Legler J, Benaroch L, Pirshahid AA, Serhan O, Cheng D, Bartley D, Carey T, Rasoulinejad P, Singh S, Thornley P, Skaik K, Belanger G, Phan P, Stratton A, Matthew C, Kingwell S, Tsai E, Wai E, Fonteyne H, Hryniuk SS, Parent E, Huang E, Stampe K, Beaulieu MJ, Chan M, Thevasagayam G, Marino-Merlo G, Malhotra AK, Lozano CS, Salaheen Z, Malvea A, Shakil H, Yefet L, Moghaddamjou A, Molot-Toker S, Witiw CD, Wilson JR, Christian E, Quon JL, Dirks PB, Drake JM, Rutka JT, Kulkarni AV, Zeller R, Lebel DE, Ibrahim GM, Dionne A, Joncas J, Barchi S, Parent S, Mac-Thiong JM, Yoon S, Aboelmagd K, Sivakuganandan A, Zulfiqar A, Murphy A, Moll S, Sorbara J, Rocos B, Lebel D, Camp M, Chan V, Shumilak G, Malhotra AK, Dansby J, Liu AM, Chan-Tai-Kong AM, Lebel DE, Illingworth KD, Skaggs DL, Lu DA, Wang Z, Clar M, Al-Shakfa MF, Shen J, Rasoulinejad P, Miyanji F, Kantar K, Carey T, Bailey C, Ghag R, Lanting B, Singh S, Urquhart J, Lung T, Sardar Z, Basu S, Gupta M, Lewis S, Eissa AT, Kato S, Lenke L, Jones K, Nielsen C, Basu S, Kelly M, Smith J, Strantzas S, Qiu Y, Pellise F, Alanay A, Quraishi N, Gray R, Yoshida G, Aziz A, Lewis S, Chaves JPG, Hsu B, Sima S, Singh B, Kulkarni V, Diwan A, Ludwig T, Moghaddam F, Aminghafari M, Choi M, Nicholls F, Seider E, Daunt L, Vashishth V, Abbas A, Cadieux C, Lewis S, Ahmadi A, Brzozowski P, Toobaie A, Rasoulinejad P, Fernandes RR, Young JJ, Urquhart J, Bailey C, McIntosh G, Glennie A, Fisher C, Perruccio AV, Rampersaud R, Glennie A, Urquhart J, Mishreky A, Fisher C, Rampersaud R, Bailey C, MacLean MA, Julien L, Patriquin G, Leblanc J, Greene R, Alant J, Barry S, Glennie RA, Oxner W, Christie SD, Pedro K, Abbas A, Bailey C, Urquhart J, MacIntosh G, Glennie A, Fisher C, Phan P, Rampersaud YR, Smith DP, Bigney EE, Hebert J, Richardson EA, Manson NA, Abraham E, Zein A, Holt K, Isaac H, Kearney J, Small C, Evaniew N, Alduwaisan A, Smith V, Whittaker T, Eckenswiller D, Soumbasis E, Tanguay R, Jacobs WB, Thomas KC, Nicholls F, Soroceanu A, Swamy G, Nahanni C, Lung TS, Young JJ, Cadieux CN, Du JT, Rampersaud R, Glennie A, Dunning C, Jones E, Oxner W, Lobo K, Lajczak P, Santos C, Rajab N, Oliveira R, Silva YP, Barbosa RG, Silva YGMD, Abbas A, Sahi G, Du JT, Johnson M, Buchel E, Toor J, Kulkarni R, Bertolino M, Walton C, Rivas G, Glaser J, Reitman CA, Lawrence J, Ravinsky R, Pedro K, Fehlings M, Alvi M, Essa A, Shakil H, Malhotra AK, Nathens AB, Badhiwala J, Yuan EY, He Y, Mathieu F, Sklar MC, Wilson J, Witiw CD, Yoon S, Reda LA, Malhotra A, Shakil H, et al, AO Spine Knowledge Forum Trauma and Infection//Rick Hansen Spinal Cord Injury Registry Network//Canadian Spine Outcomes and Research Network (CSORN) Investigators//AO Spine Knowledge Forum Tumor//CSORN Principal Investigators//AO Spine Knowledge Forum Trauma and Infection//ISNCSCI Working Group//S, Yang T, McDonald J, Perez A, Shin J, Mitchell M, Ahmed AR, Roberts R, Wright A, Anderson SJ. Canadian Spine Society: 25th Annual Scientific Conference, February 25 to 28, 2025, Fairmont Le Manoir Richelieu, La Malbaie, Charlevoix, Que., Canada. Can J Surg. 2025 Nov-Dec; 68 (6suppl3):S58-S132 Epub 2025 Dec 12
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  2. Osude N, Granger CB, Young R, Al-Khalidil H, Ward K, Leyva M, Lambert C, Tillery M, Lin A, Mehta R, Satish M, Peigh G, Wright A, Epstein LM, Lundqvist CB, Piccini JP, Sohail R, Pokorney SD. REview and improvement of Cardiac implanTable device InFection management qualitY initiative (RECTIFY): Rationale and Design for a Cardiac Implantable Electronic Device Infection Quality Initiative Demonstration Project. Am Heart J. 2025 Aug 26 [Epub ahead of print]
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  3. Li X, Ji S, Cipriani G, Hillestad ML, Eisenman ST, Barry MA, Nath KA, Linden DR, Wright A, AlAsfoor S, Grover M, Sha L, Hsi LC, Farrugia G. Adeno-associated virus-9 reverses delayed gastric emptying of solids in diabetic mice. Neurogastroenterol Motil. 2023 Nov; 35 (11):e14669 Epub 2023 Sept 13
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  4. Yuan Y, Ju YS, Kim Y, Li J, Wang Y, Yoon CJ, Yang Y, Martincorena I, Creighton CJ, Weinstein JN, Xu Y, Han L, Kim HL, Nakagawa H, Park K, Campbell PJ, Liang H, PCAWG Consortium. Author Correction: Comprehensive molecular characterization of mitochondrial genomes in human cancers. Nat Genet. 2023 Jun; 55 (6):1078
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  5. Cortes-Ciriano I, Lee JJ, Xi R, Jain D, Jung YL, Yang L, Gordenin D, Klimczak LJ, Zhang CZ, Pellman DS, Park PJ, PCAWG Structural Variation Working Group//PCAWG Consortium. Author Correction: Comprehensive analysis of chromothripsis in 2,658 human cancers using whole-genome sequencing. Nat Genet. 2023 Jun; 55 (6):1076
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  6. Zapatka M, Borozan I, Brewer DS, Iskar M, Grundhoff A, Alawi M, Desai N, Sultmann H, Moch H, Cooper CS, Eils R, Ferretti V, Lichter P, PCAWG Pathogens//PCAWG Consortium. Author Correction: The landscape of viral associations in human cancers. Nat Genet. 2023 Jun; 55 (6):1077
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  7. Akdemir KC, Le VT, Chandran S, Li Y, Verhaak RG, Beroukhim R, Campbell PJ, Chin L, Dixon JR, Futreal PA, PCAWG Structural Variation Working Group//PCAWG Consortium. Author Correction: Disruption of chromatin folding domains by somatic genomic rearrangements in human cancer. Nat Genet. 2023 Jun; 55 (6):1079
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  8. Rodriguez-Martin B, Alvarez EG, Baez-Ortega A, Zamora J, Supek F, Demeulemeester J, Santamarina M, Ju YS, Temes J, Garcia-Souto D, Detering H, Li Y, Rodriguez-Castro J, Dueso-Barroso A, Bruzos AL, Dentro SC, Blanco MG, Contino G, Ardeljan D, Tojo M, Roberts ND, Zumalave S, Edwards PA, Weischenfeldt J, Puiggros M, Chong Z, Chen K, Lee EA, Wala JA, Raine KM, Butler A, Waszak SM, Navarro FCP, Schumacher SE, Monlong J, Maura F, Bolli N, Bourque G, Gerstein M, Park PJ, Wedge DC, Beroukhim R, Torrents D, Korbel JO, Martincorena I, Fitzgerald RC, Van Loo P, Kazazian HH, Burns KH, Campbell PJ, Tubio JMC, PCAWG Structural Variation Working Group//PCAWG Consortium. Author Correction: Pan-cancer analysis of whole genomes identifies driver rearrangements promoted by LINE-1 retrotransposition. Nat Genet. 2023 Jun; 55 (6):1080
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  9. Calabrese C, Davidson NR, Demircioglu D, Fonseca NA, He Y, Kahles A, Lehmann KV, Liu F, Shiraishi Y, Soulette CM, Urban L, Greger L, Li S, Liu D, Perry MD, Xiang Q, Zhang F, Zhang J, Bailey P, Erkek S, Hoadley KA, Hou Y, Huska MR, Kilpinen H, Korbel JO, Marin MG, Markowski J, Nandi T, Pan-Hammarstrom Q, Pedamallu CS, Siebert R, Stark SG, Su H, Tan P, Waszak SM, Yung C, Zhu S, Awadalla P, Creighton CJ, Meyerson M, Ouellette BFF, Wu K, Yang H, Brazma A, Brooks AN, Goke J, Ratsch G, Schwarz RF, Stegle O, Zhang Z, PCAWG Transcriptome Core Group//PCAWG Transcriptome Working Group//PCAWG Consortium. Author Correction: Genomic basis for RNA alterations in cancer. Nature. 2023 Feb; 614 (7948):E37
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  10. Rheinbay E, Nielsen MM, Abascal F, Wala JA, Shapira O, Tiao G, Hornshoj H, Hess JM, Juul RI, Lin Z, Feuerbach L, Sabarinathan R, Madsen T, Kim J, Mularoni L, Shuai S, Lanzos A, Herrmann C, Maruvka YE, Shen C, Amin SB, Bandopadhayay P, Bertl J, Boroevich KA, Busanovich J, Carlevaro-Fita J, Chakravarty D, Chan CWY, Craft D, Dhingra P, Diamanti K, Fonseca NA, Gonzalez-Perez A, Guo Q, Hamilton MP, Haradhvala NJ, Hong C, Isaev K, Johnson TA, Juul M, Kahles A, Kahraman A, Kim Y, Komorowski J, Kumar K, Kumar S, Lee D, Lehmann KV, Li Y, Liu EM, Lochovsky L, Park K, Pich O, Roberts ND, Saksena G, Schumacher SE, Sidiropoulos N, Sieverling L, Sinnott-Armstrong N, Stewart C, Tamborero D, Tubio JMC, Umer HM, Uuskula-Reimand L, Wadelius C, Wadi L, Yao X, Zhang CZ, Zhang J, Haber JE, Hobolth A, Imielinski M, Kellis M, Lawrence MS, von Mering C, Nakagawa H, Raphael BJ, Rubin MA, Sander C, Stein LD, Stuart JM, Tsunoda T, Wheeler DA, Johnson R, Reimand J, Gerstein M, Khurana E, Campbell PJ, Lopez-Bigas N, Weischenfeldt J, Beroukhim R, Martincorena I, Pedersen JS, Getz G, PCAWG Drivers and Functional Interpretation Working Group//PCAWG Structural Variation Working Group//PCAWG Consortium. Author Correction: Analyses of non-coding somatic drivers in 2,658 cancer whole genomes. Nature. 2023 Feb; 614 (7948):E40
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  11. Gerstung M, Jolly C, Leshchiner I, Dentro SC, Gonzalez S, Rosebrock D, Mitchell TJ, Rubanova Y, Anur P, Yu K, Tarabichi M, Deshwar A, Wintersinger J, Kleinheinz K, Vazquez-Garcia I, Haase K, Jerman L, Sengupta S, Macintyre G, Malikic S, Donmez N, Livitz DG, Cmero M, Demeulemeester J, Schumacher S, Fan Y, Yao X, Lee J, Schlesner M, Boutros PC, Bowtell DD, Zhu H, Getz G, Imielinski M, Beroukhim R, Sahinalp SC, Ji Y, Peifer M, Markowetz F, Mustonen V, Yuan K, Wang W, Morris QD, Spellman PT, Wedge DC, Van Loo P, PCAWG Evolution & Heterogeneity Working Group//PCAWG Consortium. Author Correction: The evolutionary history of 2,658 cancers. Nature. 2023 Feb; 614 (7948):E42
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  12. ICGC/TCGA Pan-Cancer Analysis of Whole Genomes Consortium. Author Correction: Pan-cancer analysis of whole genomes. Nature. 2023 Feb; 614 (7948):E39
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  13. Li Y, Roberts ND, Wala JA, Shapira O, Schumacher SE, Kumar K, Khurana E, Waszak S, Korbel JO, Haber JE, Imielinski M, Weischenfeldt J, Beroukhim R, Campbell PJ, PCAWG Structural Variation Working Group//PCAWG Consortium. Author Correction: Patterns of somatic structural variation in human cancer genomes. Nature. 2023 Feb; 614 (7948):E38
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  14. Alexandrov LB, Kim J, Haradhvala NJ, Huang MN, Tian Ng AW, Wu Y, Boot A, Covington KR, Gordenin DA, Bergstrom EN, Islam SMA, Lopez-Bigas N, Klimczak LJ, McPherson JR, Morganella S, Sabarinathan R, Wheeler DA, Mustonen V, Getz G, Rozen SG, Stratton MR, PCAWG Mutational Signatures Working Group//PCAWG Consortium. Author Correction: The repertoire of mutational signatures in human cancer. Nature. 2023 Feb; 614 (7948):E41
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  15. Reyna MA, Haan D, Paczkowska M, Verbeke LPC, Vazquez M, Kahraman A, Pulido-Tamayo S, Barenboim J, Wadi L, Dhingra P, Shrestha R, Getz G, Lawrence MS, Pedersen JS, Rubin MA, Wheeler DA, Brunak S, Izarzugaza JMG, Khurana E, Marchal K, von Mering C, Sahinalp SC, Valencia A, Reimand J, Stuart JM, Raphael BJ, PCAWG Drivers and Functional Interpretation Working Group//PCAWG Consortium. Author Correction: Pathway and network analysis of more than 2500 whole cancer genomes. Nat Commun. 2022 Dec 8; 13 (1):7566 Epub 2022 Dec 08
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  16. Bhandari V, Li CH, Bristow RG, Boutros PC, PCAWG Consortium. Author Correction: Divergent mutational processes distinguish hypoxic and normoxic tumours. Nat Commun. 2022 Dec 8; 13 (1):7569 Epub 2022 Dec 08
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  17. Zhang Y, Chen F, Fonseca NA, He Y, Fujita M, Nakagawa H, Zhang Z, Brazma A, Creighton CJ, PCAWG Transcriptome Working Group//PCAWG Structural Variation Working Group//PCAWG Consortium. Author Correction: High-coverage whole-genome analysis of 1220 cancers reveals hundreds of genes deregulated by rearrangement-mediated cis-regulatory alterations. Nat Commun. 2022 Dec 8; 13 (1):7572 Epub 2022 Dec 08
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  18. Paczkowska M, Barenboim J, Sintupisut N, Fox NS, Zhu H, Abd-Rabbo D, Mee MW, Boutros PC, Reimand J, PCAWG Drivers and Functional Interpretation Working Group//PCAWG Consortium. Author Correction: Integrative pathway enrichment analysis of multivariate omics data. Nat Commun. 2022 Dec 8; 13 (1):7570 Epub 2022 Dec 08
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  19. Jiao W, Atwal G, Polak P, Karlic R, Cuppen E, Danyi A, de Ridder J, van Herpen C, Lolkema MP, Steeghs N, Getz G, Morris QD, Stein LD, PCAWG Tumor Subtypes and Clinical Translation Working Group//PCAWG Consortium. Author Correction: A deep learning system accurately classifies primary and metastatic cancers using passenger mutation patterns. Nat Commun. 2022 Dec 8; 13 (1):7573 Epub 2022 Dec 08
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  20. Cmero M, Yuan K, Ong CS, Schroder J, Corcoran NM, Papenfuss T, Hovens CM, Markowetz F, Macintyre G, PCAWG Evolution and Heterogeneity Working Group//PCAWG Consortium. Author Correction: Inferring structural variant cancer cell fraction. Nat Commun. 2022 Dec 8; 13 (1):7568 Epub 2022 Dec 08
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  21. Shuai S, Gallinger S, Stein LD, PCAWG Drivers and Functional Interpretation Working Group//PCAWG Consortium. Author Correction: Combined burden and functional impact tests for cancer driver discovery using DriverPower. Nat Commun. 2022 Dec 8; 13 (1):7571 Epub 2022 Dec 08
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  22. Sieverling L, Hong C, Koser SD, Ginsbach P, Kleinheinz K, Hutter B, Braun DM, Cortes-Ciriano I, Xi R, Kabbe R, Park PJ, Eils R, Schlesner M, Brors B, Rippe K, Jones DTW, Feuerbach L, PCAWG-Structural Variation Working Group//PCAWG Consortium. Author Correction: Genomic footprints of activated telomere maintenance mechanisms in cancer. Nat Commun. 2022 Dec 8; 13 (1):7574 Epub 2022 Dec 08
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  23. Rubanova Y, Shi R, Harrigan CF, Li R, Wintersinger J, Sahin N, Deshwar AG, Morris QD, PCAWG Evolution and Heterogeneity Working Group//PCAWG Consortium. Author Correction: Reconstructing evolutionary trajectories of mutation signature activities in cancer using TrackSig. Nat Commun. 2022 Dec 8; 13 (1):7567 Epub 2022 Dec 08
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  24. Carlevaro-Fita J, Lanzos A, Feuerbach L, Hong C, Mas-Ponte D, Pedersen JS, Johnson R, PCAWG Drivers and Functional Interpretation Group//PCAWG Consortium. Author Correction: Cancer LncRNA Census reveals evidence for deep functional conservation of long noncoding RNAs in tumorigenesis. Commun Biol. 2022 Dec 8; 5 (1):1347 Epub 2022 Dec 08
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  25. Wright AJ, Queen JH, Supsupin EP, Chuang AZ, Chen JJ, Foroozan R, Adesina OO. Prognosticators of Visual Acuity After Indirect Traumatic Optic Neuropathy. J Neuroophthalmol. 2022 Jun 1; 42 (2):203-207 Epub 2022 Mar 25
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  26. Duffley G, Lutz BJ, Szabo A, Wright A, Hess CW, Ramirez-Zamora A, Zeilman P, Chiu S, Foote KD, Okun MS, Butson CR. Home Health Management of Parkinson Disease Deep Brain Stimulation: A Randomized Clinical Trial. JAMA Neurol. 2021 Aug 1; 78 (8):972-981
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  27. Asselta R, Paraboschi EM, Gerussi A, Cordell HJ, Mells GF, Sandford RN, Jones DE, Nakamura M, Ueno K, Hitomi Y, Kawashima M, Nishida N, Tokunaga K, Nagasaki M, Tanaka A, Tang R, Li Z, Shi Y, Liu X, Xiong M, Hirschfield G, Siminovitch KA, Carbone M, Cardamone G, Duga S, Gershwin ME, Seldin MF, Invernizzi P, Canadian-US PBC Consortium//Italian PBC Genetics Study Group//UK-PBC Consortium//Japan PBC-GWAS Consortium. X Chromosome Contribution to the Genetic Architecture of Primary Biliary Cholangitis. Gastroenterology. 2021 Jun; 160 (7):2483-2495.e26 Epub 2021 Mar 04
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  28. Cano Cevallos EJ, Corsini Campioli C, Pritt BS, Toledano M, Meyer FB, Kasten MJ, Wright AJ. Nocardia pituitary abscess in an immunocompetent host. IDCases. 2021; 26:e01352 Epub 2021 Nov 27
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  29. Bailey MH, Meyerson WU, Dursi LJ, Wang LB, Dong G, Liang WW, Weerasinghe A, Li S, Li Y, Kelso S, Saksena G, Ellrott K, Wendl MC, Wheeler DA, Getz G, Simpson JT, Gerstein MB, Ding L, MC3 Working Group//PCAWG novel somatic mutation calling methods working group//PCAWG Consortium. Author Correction: Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples. Nat Commun. 2020 Nov 30; 11 (1):6232
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  30. Bailey MH, Meyerson WU, Dursi LJ, Wang LB, Dong G, Liang WW, Weerasinghe A, Li S, Li Y, Kelso S, Saksena G, Ellrott K, Wendl MC, Wheeler DA, Getz G, Simpson JT, Gerstein MB, Ding L, MC3 Working Group//PCAWG novel somatic mutation calling methods working group//PCAWG Consortium. Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples. Nat Commun. 2020 Sep 21; 11 (1):4748 Epub 2020 Sept 21
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  31. Li CH, Prokopec SD, Sun RX, Yousif F, Schmitz N, Boutros PC, PCAWG Tumour Subtypes and Clinical Translation//PCAWG Consortium. Sex differences in oncogenic mutational processes. Nat Commun. 2020 Aug 28; 11 (1):4330
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  32. Yuan Y, Ju YS, Kim Y, Li J, Wang Y, Yoon CJ, Yang Y, Martincorena I, Creighton CJ, Weinstein JN, Xu Y, Han L, Kim HL, Nakagawa H, Park K, Campbell PJ, Liang H, PCAWG Consortium. Comprehensive molecular characterization of mitochondrial genomes in human cancers. Nat Genet. 2020 Mar; 52 (3):342-352 Epub 2020 Feb 05
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  33. Rodriguez-Martin B, Alvarez EG, Baez-Ortega A, Zamora J, Supek F, Demeulemeester J, Santamarina M, Ju YS, Temes J, Garcia-Souto D, Detering H, Li Y, Rodriguez-Castro J, Dueso-Barroso A, Bruzos AL, Dentro SC, Blanco MG, Contino G, Ardeljan D, Tojo M, Roberts ND, Zumalave S, Edwards PA, Weischenfeldt J, Puiggros M, Chong Z, Chen K, Lee EA, Wala JA, Raine KM, Butler A, Waszak SM, Navarro FCP, Schumacher SE, Monlong J, Maura F, Bolli N, Bourque G, Gerstein M, Park PJ, Wedge DC, Beroukhim R, Torrents D, Korbel JO, Martincorena I, Fitzgerald RC, Van Loo P, Kazazian HH, Burns KH, Campbell PJ, Tubio JMC, PCAWG Structural Variation Working Group//PCAWG Consortium. Pan-cancer analysis of whole genomes identifies driver rearrangements promoted by LINE-1 retrotransposition. Nat Genet. 2020 Mar; 52 (3):306-319 Epub 2020 Feb 05
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  34. Akdemir KC, Le VT, Chandran S, Li Y, Verhaak RG, Beroukhim R, Campbell PJ, Chin L, Dixon JR, Futreal PA, PCAWG Structural Variation Working Group//PCAWG Consortium. Disruption of chromatin folding domains by somatic genomic rearrangements in human cancer. Nat Genet. 2020 Mar; 52 (3):294-305 Epub 2020 Feb 05
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  35. Zapatka M, Borozan I, Brewer DS, Iskar M, Grundhoff A, Alawi M, Desai N, Sultmann H, Moch H, Cooper CS, Eils R, Ferretti V, Lichter P, PCAWG Pathogens//PCAWG Consortium. The landscape of viral associations in human cancers. Nat Genet. 2020 Mar; 52 (3):320-330 Epub 2020 Feb 05
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  36. Cortes-Ciriano I, Lee JJ, Xi R, Jain D, Jung YL, Yang L, Gordenin D, Klimczak LJ, Zhang CZ, Pellman DS, Park PJ, PCAWG Structural Variation Working Group//PCAWG Consortium. Comprehensive analysis of chromothripsis in 2,658 human cancers using whole-genome sequencing. Nat Genet. 2020 Mar; 52 (3):331-341 Epub 2020 Feb 05
    View PubMed
  37. Sieverling L, Hong C, Koser SD, Ginsbach P, Kleinheinz K, Hutter B, Braun DM, Cortes-Ciriano I, Xi R, Kabbe R, Park PJ, Eils R, Schlesner M, Brors B, Rippe K, Jones DTW, Feuerbach L, PCAWG-Structural Variation Working Group//PCAWG Consortium. Genomic footprints of activated telomere maintenance mechanisms in cancer. Nat Commun. 2020 Feb 5; 11 (1):733 Epub 2020 Feb 05
    View PubMed
  38. Shuai S, Gallinger S, Stein LD, PCAWG Drivers and Functional Interpretation Working Group//PCAWG Consortium. Combined burden and functional impact tests for cancer driver discovery using DriverPower. Nat Commun. 2020 Feb 5; 11 (1):734 Epub 2020 Feb 05
    View PubMed
  39. Bhandari V, Li CH, Bristow RG, Boutros PC, PCAWG Consortium. Divergent mutational processes distinguish hypoxic and normoxic tumours. Nat Commun. 2020 Feb 5; 11 (1):737 Epub 2020 Feb 05
    View PubMed
  40. Zhang Y, Chen F, Fonseca NA, He Y, Fujita M, Nakagawa H, Zhang Z, Brazma A, Creighton CJ, PCAWG Transcriptome Working Group//PCAWG Structural Variation Working Group//PCAWG Consortium. High-coverage whole-genome analysis of 1220 cancers reveals hundreds of genes deregulated by rearrangement-mediated cis-regulatory alterations. Nat Commun. 2020 Feb 5; 11 (1):736 Epub 2020 Feb 05
    View PubMed
  41. Rubanova Y, Shi R, Harrigan CF, Li R, Wintersinger J, Sahin N, Deshwar AG, Morris QD, PCAWG Evolution and Heterogeneity Working Group//PCAWG Consortium. Reconstructing evolutionary trajectories of mutation signature activities in cancer using TrackSig. Nat Commun. 2020 Feb 5; 11 (1):731 Epub 2020 Feb 05
    View PubMed
  42. Cmero M, Yuan K, Ong CS, Schroder J, Corcoran NM, Papenfuss T, Hovens CM, Markowetz F, Macintyre G, PCAWG Evolution and Heterogeneity Working Group//PCAWG Consortium. Inferring structural variant cancer cell fraction. Nat Commun. 2020 Feb 5; 11 (1):730 Epub 2020 Feb 05
    View PubMed
  43. Paczkowska M, Barenboim J, Sintupisut N, Fox NS, Zhu H, Abd-Rabbo D, Mee MW, Boutros PC, Reimand J, PCAWG Drivers and Functional Interpretation Working Group//PCAWG Consortium. Integrative pathway enrichment analysis of multivariate omics data. Nat Commun. 2020 Feb 5; 11 (1):735 Epub 2020 Feb 05
    View PubMed
  44. Jiao W, Atwal G, Polak P, Karlic R, Cuppen E, Danyi A, de Ridder J, van Herpen C, Lolkema MP, Steeghs N, Getz G, Morris QD, Stein LD, PCAWG Tumor Subtypes and Clinical Translation Working Group//PCAWG Consortium. A deep learning system accurately classifies primary and metastatic cancers using passenger mutation patterns. Nat Commun. 2020 Feb 5; 11 (1):728 Epub 2020 Feb 05
    View PubMed
  45. Reyna MA, Haan D, Paczkowska M, Verbeke LPC, Vazquez M, Kahraman A, Pulido-Tamayo S, Barenboim J, Wadi L, Dhingra P, Shrestha R, Getz G, Lawrence MS, Pedersen JS, Rubin MA, Wheeler DA, Brunak S, Izarzugaza JMG, Khurana E, Marchal K, von Mering C, Sahinalp SC, Valencia A, Reimand J, Stuart JM, Raphael BJ, PCAWG Drivers and Functional Interpretation Working Group//PCAWG Consortium. Pathway and network analysis of more than 2500 whole cancer genomes. Nat Commun. 2020 Feb 5; 11 (1):729 Epub 2020 Feb 05
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  46. Carlevaro-Fita J, Lanzos A, Feuerbach L, Hong C, Mas-Ponte D, Pedersen JS, Johnson R, PCAWG Drivers and Functional Interpretation Group//PCAWG Consortium. Cancer LncRNA Census reveals evidence for deep functional conservation of long noncoding RNAs in tumorigenesis. Commun Biol. 2020 Feb 5; 3 (1):56 Epub 2020 Feb 05
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  47. ICGC/TCGA Pan-Cancer Analysis of Whole Genomes Consortium. Pan-cancer analysis of whole genomes. Nature. 2020 Feb; 578 (7793):82-93 Epub 2020 Feb 05
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  48. Li Y, Roberts ND, Wala JA, Shapira O, Schumacher SE, Kumar K, Khurana E, Waszak S, Korbel JO, Haber JE, Imielinski M, Weischenfeldt J, Beroukhim R, Campbell PJ, PCAWG Structural Variation Working Group//PCAWG Consortium. Patterns of somatic structural variation in human cancer genomes. Nature. 2020 Feb; 578 (7793):112-121 Epub 2020 Feb 05
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  49. Gerstung M, Jolly C, Leshchiner I, Dentro SC, Gonzalez S, Rosebrock D, Mitchell TJ, Rubanova Y, Anur P, Yu K, Tarabichi M, Deshwar A, Wintersinger J, Kleinheinz K, Vazquez-Garcia I, Haase K, Jerman L, Sengupta S, Macintyre G, Malikic S, Donmez N, Livitz DG, Cmero M, Demeulemeester J, Schumacher S, Fan Y, Yao X, Lee J, Schlesner M, Boutros PC, Bowtell DD, Zhu H, Getz G, Imielinski M, Beroukhim R, Sahinalp SC, Ji Y, Peifer M, Markowetz F, Mustonen V, Yuan K, Wang W, Morris QD, Spellman PT, Wedge DC, Van Loo P, PCAWG Evolution & Heterogeneity Working Group//PCAWG Consortium. The evolutionary history of 2,658 cancers. Nature. 2020 Feb; 578 (7793):122-128 Epub 2020 Feb 06
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