Publications

  1. Asiedu MK, Thomas CF Jr, Tomaszek SC, Peikert T, Sanyal B, Sutor SL, Aubry MC, Li P, Wigle DA. Generation and Sequencing of Pulmonary Carcinoid Tumor Cell Lines. J Thorac Oncol. 2014 Sep 12.
    View PubMed
  2. Techentin R, Foti D, Li P, Daniel E, Gilbert B, Holmes D, Al-Saffar S. Development of a semi-synthetic dataset as a testbed for big-data semantic analytics. Proceedings - 2014 IEEE International Conference on Semantic Computing, ICSC 2014. 2014; (2):252-3.
  3. McKinney BA, White BC, Grill DE, Li PW, Kennedy RB, Poland GA, Oberg AL. ReliefSeq: a gene-wise adaptive-K nearest-neighbor feature selection tool for finding gene-gene interactions and main effects in mRNA-Seq gene expression data. PLoS One. 2013; 8(12):e81527. Epub 2013 Dec 10.
    View PubMed
  4. Simon GJ, Caraballo PJ, Therneau TM, Cha SS, Castro MR, Li PW. Extending Association Rule Summarization Techniques to Assess Risk of Diabetes Mellitus. IEEE TRANSACTIONS ON KNOWLEDGE AND DATA ENGINEERING (In-Press). 2013.
  5. Simon GJ, Schrom J, Castro MR, Li PW, Caraballo PJ. Survival association rule mining towards type 2 diabetes risk assessment. AMIA Annu Symp Proc. 2013; 2013:1293-302. Epub 2013 Nov 16.
    View PubMed
  6. Kolbert CP, Feddersen RM, Rakhshan F, Grill DE, Simon G, Middha S, Jang JS, Simon V, Schultz DA, Zschunke M, Lingle W, Carr JM, Thompson EA, Oberg AL, Eckloff BW, Wieben ED, Li P, Yang P, Jen J. Multi-platform analysis of microRNA expression measurements in RNA from fresh frozen and FFPE tissues. PLoS One. 2013; 8(1):e52517. Epub 2013 Jan 31.
    View PubMed
  7. Oberg AL, Kennedy RB, Li P, Ovsyannikova IG, Poland GA. Systems biology approaches to new vaccine development. Curr Opin Immunol. 2011 Jun; 23(3):436-43. Epub 2011 May 11.
    View PubMed
  8. Simon GJ, Li PW, Jack CR Jr, Vemuri P. Understanding atrophy trajectories in Alzheimer's disease using association rules on MRI images. Proceedings of the ACM SIGKDD International Conference on Knowledge Discovery and Data Mining. 2011:369-76.
  9. Simon GJ, Kumar V, Li PW. A simple statistical model and association rule filtering for classification. Proceedings of the ACM SIGKDD International Conference on Knowledge Discovery and Data Mining. 2011; 823-31.
  10. Hellmann I, Mang Y, Gu Z, Li P, de la Vega FM, Clark AG, Nielsen R. Population genetic analysis of shotgun assemblies of genomic sequences from multiple individuals. Genome Res. 2008 Jul; 18(7):1020-9. Epub 2008 Apr 14
    View PubMed
  11. Brzoska PM, Brown C, Cassel M, Ceccardi T, Di Francisco V, Dubman A, Evans J, Fang R, Harris M, Hoover J, Hu F, Larry C, Li P, Malicdem M, Maltchenko S, Shannon M, Perkins S, Poulter K, Webster-Laig M, Xiao C, Young S, Spier G, Guegler K, Gilbert D, An efficient and high-throughput approach for experimental validation of novel human gene predictions. Genomics. 2006 Apr; 87(4):437-45. Epub 2006 Jan 09.
    View PubMed
  12. Yao A, Charlab R, Li P. Systematic identification of pseudogenes through whole genome expression evidence profiling. Nucleic Acids Res. 2006; 34(16):4477-85. Epub 2006 Aug 31.
    View PubMed
  13. Florea L, Di Francesco V, Miller J, Turner R, Yao A, Harris M, Walenz B, Mobarry C, Merkulov GV, Charlab R, Dew I, Deng Z, Istrail S, Li P, Sutton G. Gene and alternative splicing annotation with AIR. Genome Res. 2005 Jan; 15(1):54-66.
    View PubMed
  14. Scherer SW, Cheung J, Venter JC, Li PW, Mural RJ, Adams MD, Tsui LC. Human chromosome 7: DNA sequence and biology. Science. 2003 May 2; 300(5620):767-72.
    View PubMed
  15. Li P. Biological Data Extinction. OMICS. 2003 Spr; 7(1):49-50.
    View PubMed
  16. Bailey JA, Gu Z, Clark RA, Reinert K, Samonte RV, Schwartz S, Adams MD, Myers EW, Li PW, Eichler EE. Recent segmental duplications in the human genome. Science. 2002 Aug 9; 297(5583):1003-7.
    View PubMed
  17. Mural RJ, Adams MD, Myers EW, Smith HO, Miklos GL, Wides R, Halpern A, Li PW, et al. A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome. Science. 2002 May 31; 296(5573):1661-71.
    View PubMed
  18. Kerlavage A, Bonazzi V, di Tommaso M, Lawrence C, Li P, Mayberry F, Mural R, Nodell M, Yandell M, Zhang J, Thomas P. The Celera Discovery System. Nucleic Acids Res. 2002 Jan 1; 30(1):129-36.
    View PubMed
  19. Venter JC, Adams MD, Myers EW, Li PW, Mural RJ, Sutton GG, Smith HO, Yandell M, Evans CA, Holt RA, Gocayne JD, Amanatides P, Ballew RM, Huson DH, Wortman JR, Zhang Q, Kodira CD, Zheng XH, Chen L, Skupski M, Subramanian G, Thomas PD, Zhang J, Gabor Miklos The sequence of the human genome. Science. 2001 Feb 16; 291(5507):1304-51.
    View PubMed
  20. Rubin GM, Yandell MD, Wortman JR, Gabor Miklos GL, Nelson CR, Hariharan IK, Fortini ME, Li PW, Apweiler R, Fleischmann W, Cherry JM, Henikoff S, Skupski MP, Misra S, Ashburner M, Birney E, Boguski MS, Brody T, Brokstein P, Celniker SE, Chervitz SA, Coates Comparative genomics of the eukaryotes. Science. 2000 Mar 24; 287(5461):2204-15.
    View PubMed
  21. Adams MD, Celniker SE, Holt RA, Evans CA, Gocayne JD, Amanatides PG, Scherer, SE, Li PW, et al. The Genome Sequence of Drosophila melanogaster. Science. 2000 Mar 24; 287(5461):2185-95.
    View PubMed
  22. Letovsky S, Cottingham R, Porter C, Li P. GDB: the Human Genome Database. Nucleic Acid Research. 1998; 26(1):94-9.
    View PubMed
  23. Fasman KH, Letovsky SI, Li P, Cottingham RW, Kingsbury DT. The GDB Human Genome Database Anno 1997. Nucleic Acids Res 1 1997 Jan 1; 25(1):72-81.
    View PubMed
  24. Li P, Waldo D, Pineo S, Foster P. An efficient delivery historical information for the mendelian inheritance in Man Database. JAMIA Symposium Supplement:1995 SCAMC Proceedings. New Orleans,LA, 1995 Nov:127-31.
  25. Li P, Fasman K. Toolkit technology for database federation. 1995 Annual Meeting of CODATA Task Group on Biological Macromolecules. George Mason University, Fairfax, Virginia, 1995 Jun.
  26. Li P, Kramer L, Pineo S, Kulp D. Evolving a legacy system: restructuring the mendelian inheritance in Man Database. JAMIA Symposium Supplement: SCAMC Proceedings. Washington, DC. 1994 Nov:344-8.
  27. Pearson P, Francomano C, Foster P, Bocchini C, Li P, McKusick V. The status of online Mendelian inheritance in man (OMIM) medio 1994. Nucleic Acids Res. 1994 Sep; 22(17):3470-3.
    View PubMed