Publications

  1. Blancas-Mejia LM, Tischer A, Thompson JR, Tai J, Wang L, Auton M, Ramirez-Alvarado M. Kinetic control in protein folding for light chain amyloidosis and the differential effects of somatic mutations. J Mol Biol. 2014 Jan 23; 426(2):347-61. Epub 2013 Oct 22.
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  2. Guidugli L, Pankratz VS, Singh N, Thompson J, Erding CA, Engel C, Schmutzler R, Domchek S, Nathanson K, Radice P, Singer C, Tonin PN, Lindor NM, Goldgar DE, Couch FJ. A classification model for BRCA2 DNA binding domain missense variants based on homology-directed repair activity. Cancer Res. 2013 Jan 1; 73(1):265-75. Epub 2012 Oct 29.
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  3. Kato T, Thompson JR, Park EY. Construction of new ligation-independent cloning vectors for the expression and purification of recombinant proteins in silkworms using BmNPV bacmid system. PLoS One. 2013; 8(5):e64007. Epub 2013 May 10.
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  4. Hirata T, Cabrero P, Berkholz DS, Bondeson DP, Ritman EL, Thompson JR, Dow JA, Romero MF. In vivo Drosophilia genetic model for calcium oxalate nephrolithiasis. Am J Physiol Renal Physiol. 2012 Dec 1; 303(11):F1555-62. Epub 2012 Sep 19.
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  5. Singh N, Basnet H, Wiltshire TD, Mohammad DH, Thompson JR, Heroux A, Botuyan MV, Yaffe MB, Couch FJ, Rosenfeld MG, Mer G. Dual recognition of phosphoserine and phosphotyrosine in histone variant H2A.X by DNA damage response protein MCPH1. Proc Natl Acad Sci U S A. 2012 Sep 4; 109(36):14381-6. Epub 2012 Aug 20.
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  6. Cui G, Park S, Badeaux AI, Kim D, Lee J, Thompson JR, Yan F, Kaneko S, Yuan Z, Botuyan MV, Bedford MT, Cheng JQ, Mer G. PHF20 is an effector protein of p53 double lysine methylation that stabilizes and activates p53. Nat Struct Mol Biol. 2012 Sep; 19(9):916-24. Epub 2012 Aug 05.
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  7. DiCostanzo AC, Thompson JR, Peterson FC, Volkman BF, Ramirez-Alvarado M. Tyrosine residues mediate fibril formation in a dynamic light chain dimer interface. J Biol Chem. 2012 Aug 10; 287(33):27997-8006. Epub 2012 Jun 27.
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  8. Kumar R, Tebben PJ, Thompson JR. Vitamin D and the kidney. Arch Biochem Biophys. 2012 Jul 1; 523(1):77-86. Epub 2012 Mar 15.
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  9. Hirata T, Czapar A, Brin L, Haritonova A, Bondeson DP, Linser P, Cabrero P, Thompson J, Dow JA, Romero MF. Ion and solute transport by Prestin in Drosophila and Anopheles. J Insect Physiol. 2012 Apr; 58(4):563-9. Epub 2012 Jan 30.
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  10. Su D, Hu Q, Li Q, Thompson JR, Cui G, Fazly A, Davies BA, Botuyan MV, Zhang Z, Mer G. Structural basis for recognition of H3K56-acetylated histone H3-H4 by the chaperone Rtt106. Nature. 2012 Mar 1; 483(7387):104-7. Epub 2012 Feb 05.
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  11. Singh N, Wiltshire TD, Thompson JR, Mer G, Couch FJ. Molecular basis for the association of microcephalin (MCPH1) protein with the cell division cycle protein 27 (Cdc27) subunit of the anaphase-promoting complex. J Biol Chem. 2012 Jan 20; 287(4):2854-62. Epub 2011 Dec 02.
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  12. Su D, Hu Q, Zhou H, Thompson JR, Xu RM, Zhang Z, Mer G. Structure and histone binding properties of the Vps75-Rtt109 chaperone-lysine acetyltransferase complex. J Biol Chem. 2011 May 6; 286(18):15625-9. Epub 2011 Mar 22.
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  13. Kumar R, Thompson JR. The regulation of parathyroid hormone secretion and synthesis. J Am Soc Nephrol. 2011 Feb; 22(2):216-24. Epub 2010 Dec 16
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  14. Benirschke RC, Thompson JR, Nomine Y, Wasielewski E, Juranic N, Macura S, Hatakeyama S, Nakayama KI, Botuyan MV, Mer G. Molecular basis for the association of human E4B U box ubiquitin ligase with E2-conjugating enzymes UbcH5c and Ubc4. Structure. 2010 Aug 11; 18(8):955-65.
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  15. Chang MH, Plata C, Sindic A, Ranatunga WK, Chen AP, Zandi-Nejad K, Chan KW, Thompson J, Mount DB, Romero MF. Slc26a9 is inhibited by the R-region of the cystic fibrosis transmembrane conductance regulator via the STAS domain. J Biol Chem. 2009 Oct 9; 284(41):28306-18. Epub 2009 Jul 30.
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  16. Weaver TM, Hocking JM, Bailey LJ, Wawrzyn GT, Howard DR, Sikkink LA, Ramirez-Alvarado M, Thompson JR. Structural and functional studies of truncated hemolysin A from Proteus mirabilis. J Biol Chem. 2009 Aug 14; 284(33):22297-309. Epub 2009 Jun 03.
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  17. Randles EG, Thompson JR, Martin DJ, Ramirez-Alvarado M. Structural alterations within native amyloidogenic immunoglobulin light chains. J Mol Biol. 2009 May 29; 389(1):199-210. Epub 2009 Apr 08.
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  18. Lai JP, Thompson JR, Sandhu DS, Roberts LR. Heparin-degrading sulfatases in hepatocellular carcinoma: roles in pathogenesis and therapy targets. Future Oncol. 2008 Dec; 4(6):803-14.
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  19. Baden EM, Randles EG, Aboagye AK, Thompson JR, Ramirez-Alvarado M. Structural insights into the role of mutations in amyloidogenesis. J Biol Chem. 2008 Nov 7; 283(45):30950-6. Epub 2008 Sep 02.
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  20. Baden EM, Owen BA, Peterson FC, Volkman BF, Ramirez-Alvarado M, Thompson JR. Altered dimer interface decreases stability in an amyloidogenic protein. J Biol Chem. 2008 Jun 6; 283(23):15853-60. Epub 2008 Apr 08.
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  21. Lee J, Thompson JR, Botuyan MV, Mer G. Distinct binding modes specify the recognition of methylated histones H3K4 and H4K20 by JMJD2A-tudor. Nat Struct Mol Biol. 2008 Jan; 15(1):109-11. Epub 2007 Dec 16.
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  22. Botuyan MV, Lee J, Ward IM, Kim JE, Thompson JR, Chen J, Mer G. Structural basis for the methylation state-specific recognition of histone H4-K20 by 53BP1 and Crb2 in DNA repair. Cell. 2006 Dec 29; 127(7):1361-73.
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  23. Ryan ZC, Craig TA, Venyaminov SY, Thompson JR, Kumar R. Biophysical properties of the extra-cellular domain of the calcium-sensing receptor. Biochem Biophys Res Commun. 2006 Oct 13; 349(1):339-44. Epub 2006 Aug 17.
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  24. Craig TA, Benson LM, Bergen HR 3rd, Venyaminov SY, Salisbury JL, Ryan ZC, Thompson JR, Sperry J, Gross ML, Kumar R. Metal-binding properties of human centrin-2 determined by micro-electrospray ionization mass spectrometry and UV spectroscopy. J Am Soc Mass Spectrom. 2006 Aug; 17(8):1158-71. Epub 2006 Jun 05.
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  25. Thompson JR, Ryan ZC, Salisbury JL, Kumar R. The structure of the human centrin 2-xeroderma pigmentosum group C protein complex. J Biol Chem. 2006 Jul 7; 281(27):18746-52. Epub 2006 Apr 20.
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  26. Thompson JR, Bell JK, Bratt J, Grant GA, Banaszak LJ. Vmax regulation through domain and subunit changes. The active form of phosphoglycerate dehydrogenase. Biochemistry. 2005; 44(15):5763-73.
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  27. Bailey L, Agger S, Peterson L, Thompson J, Weaver T. Crystallization of truncated hemolysin A from proteus mirabilis. Acta Crystallograph Sect F. 2005; 61(Pt 4):448-50.
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  28. Farooqui M, Franco PJ, Thompson J, Kagechika H, Chandraratna RA, Banaszak L, Wei LN. Effects of retinoid ligands on RIP140: molecular interaction with retinoid receptors and biological activity. Biochemistry. 2003; 42(4):971-9.
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  29. Thompson J, Banaszak L. Lipid-protein interactions in lipovitellin. Biochemistry. 2002; 41(30):9398-409.
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  30. Bell JK, Yennawar HP, Wright SK, Thompson JR, Viola RE, Banaszak LJ. Structural analyses of a malate dehydrogenase with a variable active site. J Biol Chem. 2001 Aug 17; 276(33):31156-62. Epub 2001 Jun 01.
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  31. Ropson IJ, Yowler BC, Dalessio PM, Banaszak L, Thompson J. Properties and crystal structure of a beta-barrel folding mutant. Biophys J. 2000; 78(3):1551-60.
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  32. Thompson J, Reese-Wagoner A, Banaszak L. Liver fatty acid binding protein: species variation and the accommodation of different ligands. Biochim Biophys Acta. 1999; 1441:117-30.
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  33. Reese-Wagoner A, Thompson J, Banaszak L. Structural properties of the adipocyte lipid binding protein. Biochim Biophys Acta. 1999; 1441(2-3):106-16.
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  34. Thompson J, Ory J, Reese-Wagoner A, Banaszak L. The liver fatty acid binding protein-comparison of cavity properties of intracellular lipid-binding proteins. Mol Cell Biochem. 1999; 192:9-16.
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  35. Thompson J, Winter N, Terwey D, Bratt J, Banaszak L. The crystal structure of the liver fatty acid-binding protein. A complex with two bound oleates. J Biol Chem. 1997; 272(11):7140-50.
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  36. Thompson JR, Bratt JM, Banaszak LJ. Crystal structure of cellular retinoic acid binding protein I shows increased access to the binding cavity due to formation of an intermolecular beta-sheet. J Mol Biol. 1995; 252(4):433-46.
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  37. Allison DP, Thompson JR, Jacobson KB, Warmack RJ, Ferrell TL. Scanning tunneling microscopy and spectroscopy of plasmid DNA. Scanning Microsc. 1990; 4(3):517-22.
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