Publications

  1. Sharma DK, Solbrig HR, Tao C, Weng C, Chute CG, Jiang G. Building a semantic web-based metadata repository for facilitating detailed clinical modeling in cancer genome studies. J Biomed Semantics. 2017 Jun 05; 8: (1)19.
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  2. Heit JA, Armasu SM, McCauley BM, Kullo IJ, Sicotte H, Pathak J, Chute CG, Gottesman O, Bottinger EP, Denny JC, Roden DM, Li R, Ritchie MD, de Andrade M. Identification of unique venous thromboembolism-susceptibility variants in African-Americans. Thromb Haemost. 2017 Apr 03; 117: (4)758-768.
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  3. Mosley JD, Shoemaker MB, Wells QS, Darbar D, Shaffer CM, Edwards TL, Bastarache L, McCarty CA, Thompson W, Chute CG, Jarvik GP, Crosslin DR, Larson EB, Kullo IJ, Pacheco JA, Peissig PL, Brilliant MH, Linneman JG, Witte JS, Denny JC, Roden DM. Investigating the Genetic Architecture of the PR Interval Using Clinical Phenotypes. Circ Cardiovasc Genet. 2017 Apr; 10 (2)
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  4. Dumitrescu L, Ritchie MD, Denny JC, El Rouby NM, McDonough CW, Bradford Y, Ramirez AH, Bielinski SJ, Basford MA, Chai HS, Peissig P, Carrell D, Pathak J, Rasmussen LV, Wang X, Pacheco JA, Kho AN, Hayes MG, Matsumoto M, Smith ME, Li R, Cooper-DeHoff RM, Kullo IJ, Chute CG, Chisholm RL, Jarvik GP, Larson EB, Carey D, McCarty CA, Williams MS, Roden DM, Bottinger E, Johnson JA, de Andrade M, Crawford DC. Genome-wide study of resistant hypertension identified from electronic health records. PLoS One. 2017; 12 (2):e0171745 Epub 2017 Feb 21
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  5. Mosley JD, van Driest SL, Wells QS, Shaffer CM, Edwards TL, Bastarache L, McCarty CA, Thompson W, Chute CG, Jarvik GP, Crosslin DR, Larson EB, Kullo IJ, Pacheco JA, Peissig PL, Brilliant MH, Linneman JG, Denny JC, Roden DM. Defining a Contemporary Ischemic Heart Disease Genetic Risk Profile Using Historical Data. Circ Cardiovasc Genet. 2016 Dec; 9 (6):521-530 Epub 2016 Oct 25
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  6. Jiang G, Kiefer RC, Rasmussen LV, Solbrig HR, Mo H, Pacheco JA, Xu J, Montague E, Thompson WK, Denny JC, Chute CG, Pathak J. Developing a data element repository to support EHR-driven phenotype algorithm authoring and execution. J Biomed Inform. 2016 Aug; 62:232-42.
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  7. Bush WS, Crosslin DR, Owusu-Obeng A, Wallace J, Almoguera B, Basford MA, Bielinski SJ, Carrell DS, Connolly JJ, Crawford D, Doheny KF, Gallego CJ, Gordon AS, Keating B, Kirby J, Kitchner T, Manzi S, Mejia AR, Pan V, Perry CL, Peterson JF, Prows CA, Ralston J, Scott SA, Scrol A, Smith M, Stallings SC, Veldhuizen T, Wolf W, Volpi S, Wiley K, Li R, Manolio T, Bottinger E, Brilliant MH, Carey D, Chisholm RL, Chute CG, Haines JL, Hakonarson H, Harley JB, Holm IA, Kullo IJ, Jarvik GP, Larson EB, McCarty CA, Williams MS, Denny JC, Rasmussen-Torvik LJ, Roden DM, Ritchie MD. Genetic variation among 82 pharmacogenes: The PGRNseq data from the eMERGE network. Clin Pharmacol Ther. 2016 Aug; 100 (2):160-9 Epub 2016 June 01
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  8. Mosley JD, Shaffer CM, Van Driest SL, Weeke PE, Wells QS, Karnes JH, Velez Edwards DR, Wei WQ, Teixeira PL, Bastarache L, Crawford DC, Li R, Manolio TA, Bottinger EP, McCarty CA, Linneman JG, Brilliant MH, Pacheco JA, Thompson W, Chisholm RL, Jarvik GP, Crosslin DR, Carrell DS, Baldwin E, Ralston J, Larson EB, Grafton J, Scrol A, Jouni H, Kullo IJ, Tromp G, Borthwick KM, Kuivaniemi H, Carey DJ, Ritchie MD, Bradford Y, Verma SS, Chute CG, Veluchamy A, Siddiqui MK, Palmer CN, Doney A, MahmoudPour SH, Maitland-van der Zee AH, Morris AD, Denny JC, Roden DM. A genome-wide association study identifies variants in KCNIP4 associated with ACE inhibitor-induced cough. Pharmacogenomics J. 2016 Jun; 16: (3)231-7.
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  9. Oniki TA, Zhuo N, Beebe CE, Liu H, Coyle JF, Parker CG, Solbrig HR, Marchant K, Kaggal VC, Chute CG, Huff SM. Clinical element models in the SHARPn consortium. J Am Med Inform Assoc. 2016 Mar; 23: (2)248-56.
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  10. Jiang G, Evans J, Endle CM, Solbrig HR, Chute CG. Using Semantic Web technologies for the generation of domain-specific templates to support clinical study metadata standards. J Biomed Semantics. 2016; 7:10.
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  11. Hong N, Pathak J, Chute CG, Jiang G. Developing a modular architecture for creation of rule-based clinical diagnostic criteria. BioData Min. 2016; 9:33.
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  12. Rasmussen LV, Overby CL, Connolly J, Chute CG, Denny JC, Freimuth RR, Hartzler AL, Holm IA, Manzi S, Pathak J, Peissig PL, Smith M, Williams MS, Shirts BH, Stoffel EM, Tarczy-Hornoch P, Rohrer Vitek CR, Wolf WA, Starren J. Practical considerations for implementing genomic information resources: Experiences from eMERGE and CSER: Experiences from eMERGE and CSER Applied Clinical Informatics. 2016; 7: (3)870-82.
  13. Verma SS, Cooke Bailey JN, Lucas A, Bradford Y, Linneman JG, Hauser MA, Pasquale LR, Peissig PL, Brilliant MH, McCarty CA, Haines JL, Wiggs JL, Vrabec TR, Tromp G, Ritchie MD, Bickel J, Chandler A, Holm I, Kohane I, Manzi S, Markianos K, Palmer N, Perry C, Savova G, Wolf W, Wong Kong S, Antommaria A, Cobb B, Harley J, Hutton J, Lingren T, Lynch J, Marsolo K, Myers M, Namjou B, Prows C, Solti I, Vinks S, Wagner M, Abrams D, Almoguera B, Chiavacci R, Connolly J, Devoto M, Hakonarson H, Keating B, Kim C, Mentch F, Qui H, Sleiman P, Tian L, Vazquez L, Bartko B, Bock J, Borthwick K, Carey D, Colonie R, Elston R, Faucett A, Fetterolf S, Gerhard G, Kuivaniemi H, Ledbetter D, Lipsky E, Pendergrass S, Sundaresan A, Smelser D, Williams J, Williams M, Wood C, Albrecht J, Carlson C, Carrell D, Crane P, Cronkite D, Crosslin D, Davis C, Ehrlich K, Fullterton M, Gallego C, Gordon A, Grafton J, Hansen K, Hartzler A, Jarvik G, Larson E, Leppig K, Mukherjee S, Ralston J, Scrol A, Tarczy-Hornoch P, Trinidad S, Bielinski S, Bruce K, Chute C, De Andrade M, Jouni H, Heit J, Isseh I, Koenig B, Kullo I, Li D, McCormick J, Pathak J, Russell J, Schultz C, Vitek C, Wussow L, Sharp R, Olson A, Chandra H, Armstrong G, Berg R, Brautbar A, Brilliant M, Finamore J, Frost N, Hall M, He M, Kitchner T, Lin S, Linneman J, McCarty C, Peissig P, Shefali S, Strenn R, Weichelt B, Bagiella E, Bottinger E, Dieterich D, Ellis S, Ferryman K, Friedman C, Friedman S, Galarneau G, Gomez A, Gottesman O, Hulot JS, Horowitz C, Hripcsak G, Kannry J, Kenny E, Keppel Y, Lin J, Lotay V, Mejia A, Nadukuru R, Peter I, Rhodes R, Sanderson S, Scott S, Ullman T, Weijia Z, Weng C, Zinberg R, Armstrong L, Aufox S, Baker D, Cameron K, Chisholm R, Christensen C, Greenland P, Hayes G, Heathcote M, Kho A, Lowe B, Jackson K, Pacheco J, Pan V, Persell S, Rasmussen L, Rasmussen-Torvik L, Smith M, Starren J, Thompson W, Wicklund C, Brothers K, Chen L, Clayton E, Cowan J, Crawford D, Denny J, Edwards T, Harris P, Garrison N, Malin B, McGregor T, Peterson J, Roden D, Speltz P, Stallings S, Stroud M, Velez D, Van Driest S, Wilke R, Basford M, Claar MB, Hardebeck A, Kirby J, Ritchie M, Setia S, Kaufman D, Li R, Manolio T, Allingham RR, Budenz DL, Kang JH, Gaasterland D, Gaasterland T, Lee RK, Lichter PR, Liu Y, Moroi SE, Realini A, Ritch R, Richards JE, Schuman JS, Scott B, Singh K, Vollrath D, Weinreb RN, Wollstein G, Yaspan BL, Yoneyama S, Zack D, Zhang K, Pericak-Vance M. Epistatic gene-based interaction analyses for glaucoma in eMERGE and NEIGHBOR consortium PLoS Genetics. 2016; 12: (9)e1006186.
  14. Zhu Q, Liu H, Chute CG, Ferber M. EHR based Genetic Testing Knowledge Base (iGTKB) Development. BMC Med Inform Decis Mak. 2015 Nov 25; 15(Suppl 4):S3.
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  15. Shirts BH, Salama JS, Aronson SJ, Chung WK, Gray SW, Hindorff LA, Jarvik GP, Plon SE, Stoffel EM, Tarczy-Hornoch PZ, Van Allen EM, Weck KE, Chute CG, Freimuth RR, Grundmeier RW, Hartzler AL, Li R, Peissig PL, Peterson JF, Rasmussen LV, Starren JB, Williams MS, Overby CL. CSER and eMERGE: current and potential state of the display of genetic information in the electronic health record. J Am Med Inform Assoc. 2015 Nov; 22 (6):1231-42 Epub 2015 July 03
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  16. Mo H, Thompson WK, Rasmussen LV, Pacheco JA, Jiang G, Kiefer R, Zhu Q, Xu J, Montague E, Carrell DS, Lingren T, Mentch FD, Ni Y, Wehbe FH, Peissig PL, Tromp G, Larson EB, Chute CG, Pathak J, Denny JC, Speltz P, Kho AN, Jarvik GP, Bejan CA, Williams MS, Borthwick K, Kitchner TE, Roden DM, Harris PA. Desiderata for computable representations of electronic health records-driven phenotype algorithms. J Am Med Inform Assoc. 2015 Nov; 22: (6)1220-30.
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  17. Legaz-Garcia, Menarguez-Tortosa M, Fernandez-Breis JT, Chute CG, Tao C. Transformation of standardized clinical models based on OWL technologies: from CEM to OpenEHR archetypes. J Am Med Inform Assoc. 2015 May; 22: (3)536-44.
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  18. Sugar A, Gal RL, Kollman C, Raghinaru D, Dontchev M, Croasdale CR, Feder RS, Holland EJ, Lass JH, Macy JI, Mannis MJ, Smith PW, Soukiasian SH, Beck RW, Chow CY, Dunn SP, Heidemann DG, MacLeod T, Price T, Belin MW, Schultze RL, Semeiks C, Sutherland C, Oliva MS, Rotkis WM, Huddleston C, McDonald R, Taylor J, Verdier DD, Johnson P, Lass JH, Reinhart WJ, Singh A, Thomas JM, Trocme SD, Brown L, Mines K, Murray M, Norell M, Shaffer S, Washington K, Hamilton SM, Jayawant GC, Lee WB, Larson J, Simner M, Gross RH, Shaw EL, Blackburn P, Maskin SL, Eggers E, Lutzk H, Wagner S, Ayres BD, Ayres BD, Raber IM, DiCicco J, Spanelis-Diaz I, Sugar J, Tu E, Byrne D, Gorovoy MS, Glinos D, Lehet R, Nolan B, Manning FJ, Shelly B, Boland TS, Pascucci SE, Kunz D, Farjo QA, Meyer RF, Mian SI, Soong HK, Sugar A, Hussain M, Knowlton J, Pope C, Radenbaugh P, Kellogg WK, Galentine PG, Rosen GB, Ugland DN, Schafer M, Hannush SB, Bokosky JE, Riner D, Caudill JW, Coleman L, Feder RS, Kaminski L, Affeldt JC, Blanton CL, Cancino M, Holland EJ, Jost A, Meyer A, Bowman RW, Cavanagh HD, El-Agha MSH, McCulley JP, Molai M, Gillette TE, Buchan I, Corrigan M, Leahey AB, Malinowski A, Croasdale CR, Blaser S, DeBaufer J, Moudry L, Eiferman RA, Shields S, Soukiasian SH, Brown K, Morse PA, Sexton P, Dholakia BK, Randleman JB, Stulting RD, Brown J, Larson P, Loupe D, Stark WJ, Pratzer K, Kenyon KR, Rodman RC, Crompton K, Beebe WE, Gelender H, Heinle S, Ching SS, Plotnik RD, Anstey J, Fedick N, MacDowell P, Skrine K, Stoutenburg A, Goldberg MA, Owen K, Sumers K, Spentz L, Wykle A, Chem KC, Fynn-Thompson NA, McColgin AZ, Raizman MB, Healy P, Pereira J, Rosenfeld SI, Salvati E, Beach D, Davis EA, Hardten DR, Lindstrom RL, DeMarchi J, Jordan A, Lindstrom R, Mork S, Rockvam A, Mannis MJ, Imson K, Saya M, Sponzo M, Wallace C, Ford JG, Meisler DM, Holody L, Dobbins K, Price FW, Zeh WG, Quillin C, Berkowitz PJ, Zubik L, Lindquist TD, Sims L, Goodman DF, Ali AM, Beatty RF, Sutphin JE, Farjo AA, Goins KM, Mullinnix C, Burris TE, Johnson S, Kerns D, Powell J, Swenson P, Shriver PA, Williams D, Perry K, Wells M, Self CA, Wilbanks GA, Chute C, Hart C, Chuck RS, Gaster RN, Bradley M, Cohen A, Eghbali K, Farid M, Garg S, Grijalva J, Lomazow W, Kielty DW, Davis GH, Bourg JM, Van Meter WS, Webb J, Smith PW, Bradshaw R, Mewborn T, Sanchez J, Schaeffer AR, Owens C, Price C, Cohen EJ, Laibson PR, Rapuano CJ, Gardiner A, Baratz KH, Halpern BL, Pavilack MA, Gallagher S, Rosen GB, Doughman DJ, Kaufman SC, Cook S, Holleschau A, Perl T, Pak SM, Fornelos A, Cowden JW, Perlman EM, Cozzo J, Gallagher-Sylvia M, Olson LE, Skoog ED, Dobbs E, Gruzensky WD, Groos EB, Alexander D, Mifflin MD, Lundergan MK, Harrison D, Berger ST, Hyszczak S, Solomon KD, Bradham C, Dennis RF, Rubenstein JB, Levine S, Khan H, et al. Factors associated with corneal graft survival in the cornea donor study. Jama Ophthalmology. 2015 Mar; 133(3):246-54.
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  19. Harrison AM, Thongprayoon C, Kashyap R, Chute CG, Gajic O, Pickering BW, Herasevich V. Developing the surveillance algorithm for detection of failure to recognize and treat severe sepsis. Mayo Clin Proc. 2015 Feb; 90(2):166-75. Epub 2015 Jan 06.
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  20. Jiang G, Evans J, Oniki TA, Coyle JF, Bain L, Huff SM, Kush RD, Chute CG. Harmonization of detailed clinical models with clinical study data standards. Methods Inf Med. 2015; 54: (1)65-74.
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  21. Wang L, Liu H, Chute CG, Zhu Q. Cancer based pharmacogenomics network supported with scientific evidences: from the view of drug repurposing. BioData Min. 2015; 8:9.
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  22. Jiang G, Liu H, Solbrig HR, Chute CG. Mining severe drug-drug interaction adverse events using Semantic Web technologies: a case study. BioData Min. 2015; 8:12.
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  23. Jiang G, Solbrig HR, Kiefer R, Rasmussen LV, Mo H, Speltz P, Thompson WK, Denny JC, Chute CG, Pathak J. A Standards-based Semantic Metadata Repository to Support EHR-driven Phenotype Authoring and Execution. Stud Health Technol Inform. 2015; 216:1098.
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  24. Hong N, Jiang G, Pathak J, Chute CG. A Pilot Study on Modeling of Diagnostic Criteria Using OWL and SWRL. Stud Health Technol Inform. 2015; 216:1093.
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  25. Rodrigues JM, Robinson D, Della Mea V, Campbell J, Rector A, Schulz S, Brear H, Ustun B, Spackman K, Chute CG, Millar J, Solbrig H, Brand Persson K. Semantic Alignment between ICD-11 and SNOMED CT. Stud Health Technol Inform. 2015; 216:790-4
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  26. Jiang G, Solbrig HR, Pathak J, Chute CG. Developing a Standards-Based Information Model for Representing Computable Diagnostic Criteria: A Feasibility Study of the NQF Quality Data Model. Stud Health Technol Inform. 2015; 216:1097.
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  27. Jiang G, Sohn S, Zimmermann MT, Wang C, Liu H, Chute CG. Drug Normalization for Cancer Therapeutic and Druggable Genome Target Discovery. AMIA Jt Summits Transl Sci Proc. 2015; 2015:72-6.
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  28. Priya S, Jiang G, Dasari S, Zimmermann MT, Wang C, Heflin J, Chute CG. A Semantic Web-based System for Mining Genetic Mutations in Cancer Clinical Trials. AMIA Jt Summits Transl Sci Proc. 2015; 2015:142-6.
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  29. Wagholikar KB, MacLaughlin KL, Chute CG, Greenes RA, Liu H, Chaudhry R. Granular Quality Reporting for Cervical Cytology Testing. AMIA Jt Summits Transl Sci Proc. 2015; 2015:178-82.
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  30. Wang C, Zimmermann MT, Chute CG, Jiang G. Adverse Drug Events-based Tumor Stratification for Ovarian Cancer Patients Receiving Platinum Therapy. AMIA Jt Summits Transl Sci Proc. 2015; 2015:51-5.
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  31. Herr TM, Bielinski SJ, Bottinger E, Brautbar A, Brilliant M, Chute CG, Denny J, Freimuth RR, Hartzler A, Kannry J, Kohane IS, Kullo IJ, Lin S, Pathak J, Peissig P, Pulley J, Ralston J, Rasmussen L, Roden D, Tromp G, Williams MS, Starren J. A conceptual model for translating omic data into clinical action. J Pathol Inform. 2015; 6:46.
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  32. Herr TM, Bielinski SJ, Bottinger E, Brautbar A, Brilliant M, Chute CG, Cobb BL, Denny JC, Hakonarson H, Hartzler AL, Hripcsak G, Kannry J, Kohane IS, Kullo IJ, Lin S, Manzi S, Marsolo K, Overby CL, Pathak J, Peissig P, Pulley J, Ralston J, Rasmussen L, Roden DM, Tromp G, Uphoff T, Weng C, Wolf W, Williams MS, Starren J. Practical considerations in genomic decision support: The eMERGE experience. J Pathol Inform. 2015; 6:50.
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  33. Hong N, Jiang G, Pathak J, Chute CG. Developing a modular architecture for creation of rule-based clinical diagnostic criteria CEUR Workshop Proceedings. 2015; 1428:
  34. Jiang G, Solbrig HR, Prud'hommeaux E, Tao C, Weng C, Chute CG. Quality Assurance of Cancer Study Common Data Elements Using A Post-Coordination Approach. AMIA Annu Symp Proc. 2015; 2015:659-68 Epub 2015 Nov 05
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  35. Solbrig HR, Prud'hommeaux E, Sharma DK, Chute CG, Jiang G. Feasibility of modeling HL7 FHIR profiles using RDF shape expressions language CEUR Workshop Proceedings. 2015; 1546:208-9.
  36. Rasmussen-Torvik LJ, Stallings SC, Gordon AS, Almoguera B, Basford MA, Bielinski SJ, Brautbar A, Brilliant MH, Carrell DS, Connolly JJ, Crosslin DR, Doheny KF, Gallego CJ, Gottesman O, Kim DS, Leppig KA, Li R, Lin S, Manzi S, Mejia AR, Pacheco JA, Pan V, Pathak J, Perry CL, Peterson JF, Prows CA, Ralston J, Rasmussen LV, Ritchie MD, Sadhasivam S, Scott SA, Smith M, Vega A, Vinks AA, Volpi S, Wolf WA, Bottinger E, Chisholm RL, Chute CG, Haines JL, Harley JB, Keating B, Holm IA, Kullo IJ, Jarvik GP, Larson EB, Manolio T, McCarty CA, Nickerson DA, Scherer SE, Williams MS, Roden DM, Denny JC. Design and anticipated outcomes of the eMERGE-PGx project: a multicenter pilot for preemptive pharmacogenomics in electronic health record systems. Clin Pharmacol Ther. 2014 Oct; 96: (4)482-9.
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  37. Pathak J, Sohn S, Clark C, Halgrim SR, Murphy SP, Maradit Kremers H, Chute CG, Yawn BP, Liu H, Rocca WA. MedXN: an open source medication extraction and normalization tool for clinical text. J Am Med Inform Assoc. 2014 Sep-Oct; 21: (5)858-65.
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  38. Sohn S, Clark C, Halgrim SR, Murphy SP, Chute CG, Liu H. MedXN: an open source medication extraction and normalization tool for clinical text. J Am Med Inform Assoc. 2014 Sep-Oct; 21(5):858-65. Epub 2014 Mar 17.
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  39. Hripcsak G, Bloomrosen M, FlatelyBrennan P, Chute CG, Cimino J, Detmer DE, Edmunds M, Embi PJ, Goldstein MM, Hammond WE, Keenan GM, Labkoff S, Murphy S, Safran C, Speedie S, Strasberg H, Temple F, Wilcox AB. Health data use, stewardship, and governance: ongoing gaps and challenges: a report from AMIA's 2012 Health Policy Meeting. J Am Med Inform Assoc. 2014 Mar-Apr; 21(2):204-11. Epub 2013 Oct 29.
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  40. Zhu Q, Tao C, Shen F, Chute CG. Exploring the pharmacogenomics knowledge base (PharmGKB) for repositioning breast cancer drugs by leveraging Web ontology language (OWL) and cheminformatics approaches. Pac Symp Biocomput. 2014; 172-82.
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  41. Bielinski SJ, Olson JE, Pathak J, Weinshilboum RM, Wang L, Lyke KJ, Ryu E, Targonski PV, Van Norstrand MD, Hathcock MA, Takahashi PY, McCormick JB, Johnson KJ, Maschke KJ, Rohrer Vitek CR, Ellingson MS, Wieben ED, Farrugia G, Morrisette JA, Kruckeberg KJ, Bruflat JK, Peterson LM, Blommel JH, Skierka JM, Ferber MJ, Black JL, Baudhuin LM, Klee EW, Ross JL, Veldhuizen TL, Schultz CG, Caraballo PJ, Freimuth RR, Chute CG, Kullo IJ. Preemptive genotyping for personalized medicine: design of the right drug, right dose, right time-using genomic data to individualize treatment protocol. Mayo Clin Proc. 2014 Jan; 89: (1)25-33.
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  42. Shameer K, Denny JC, Ding K, Jouni H, Crosslin DR, de Andrade M, Chute CG, Peissig P, Pacheco JA, Li R, Bastarache L, Kho AN, Ritchie MD, Masys DR, Chisholm RL, Larson EB, McCarty CA, Roden DM, Jarvik GP, Kullo IJ. A genome- and phenome-wide association study to identify genetic variants influencing platelet count and volume and their pleiotropic effects. Hum Genet. 2014 Jan; 133 (1):95-109 Epub 2013 Sept 12
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  43. Solbrig H, Prud'Hommeaux E, Chute CG, Davies J. A formal model for RDF dataset constraints. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 2014; 8388 LNCS:244-60.
  44. Kullo IJ, Shameer K, Jouni H, Lesnick TG, Pathak J, Chute CG, de Andrade M. The ATXN2-SH2B3 locus is associated with peripheral arterial disease: an electronic medical record-based genome-wide association study. Front Genet. 2014; 5:166.
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  45. Rodrigues JM, Schulz S, Rector A, Spackman K, Millar J, Campbell J, Ustun B, Chute CG, Solbrig H, Della Mea V, Persson KB. ICD-11 and SNOMED CT Common Ontology: circulatory system. Stud Health Technol Inform. 2014; 205:1043-7
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  46. Zhang Y, Tao C, Jiang G, Nair AA, Su J, Chute CG, Liu H. Network-based analysis reveals distinct association patterns in a semantic MEDLINE-based drug-disease-gene network. J Biomed Semantics. 2014; 5:33.
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  47. Cronin RM, Field JR, Bradford Y, Shaffer CM, Carroll RJ, Mosley JD, Bastarache L, Edwards TL, Hebbring SJ, Lin S, Hindorff LA, Crane PK, Pendergrass SA, Ritchie MD, Crawford DC, Pathak J, Bielinski SJ, Carrell DS, Crosslin DR, Ledbetter DH, Carey DJ, Tromp G, Williams MS, Larson EB, Jarvik GP, Peissig PL, Brilliant MH, McCarty CA, Chute CG, Kullo IJ, Bottinger E, Chisholm R, Smith ME, Roden DM, Denny JC. Phenome-wide association studies demonstrating pleiotropy of genetic variants within FTO with and without adjustment for body mass index. Front Genet. 2014; 5:250.
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  48. Schulz S, Rodrigues JM, Rector A, Spackman K, Campbell J, Ustun B, Chute CG, Solbrig H, Della Mea V, Millar J, Brand Persson K. What's in a class? Lessons learnt from the ICD - SNOMED CT harmonisation. Stud Health Technol Inform. 2014; 205:1038-42.
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  49. Shen F, Li D, Liu H, Lee Y, Pathak J, Chute CG, Tao C. Using semantic web technologies for quality measure phenotyping algorithm representation and automatic execution on EHR data. 2014 IEEE-EMBS International Conference on Biomedical and Health Informatics, BHI 2014. 2014(3):531-4.
  50. Wagholikar KB, MacLaughlin KL, Casey PM, Kastner TM, Henry MR, Hankey RA, Peters SG, Greenes RA, Chute CG, Liu H, Chaudhry R. Automated recommendation for cervical cancer screening and surveillance. Cancer Inform. 2014; 13: (Suppl 3)1-6.
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  51. Malinowski JR, Denny JC, Bielinski SJ, Basford MA, Bradford Y, Peissig PL, Carrell D, Crosslin DR, Pathak J, Rasmussen L, Pacheco J, Kho A, Newton KM, Li R, Kullo IJ, Chute CG, Chisholm RL, Jarvik GP, Larson EB, McCarty CA, Masys DR, Roden DM, de Andrade M, Ritchie MD, Crawford DC. Genetic variants associated with serum thyroid stimulating hormone (TSH) levels in European Americans and African Americans from the eMERGE Network. PLoS One. 2014; 9: (12)e111301.
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  52. Clark K, Sharma D, Qin R, Chute CG, Tao C. A use case study on late stent thrombosis for ontology-based temporal reasoning and analysis. J Biomed Semantics. 2014; 5: (1)49.
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  53. Jiang G, Liu H, Solbrig HR, Chute CG. Mining severe drug-drug interaction adverse events using semantic web technologies: A case study. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 2014; 8643:628-38.
  54. Wang L, Liu H, Chute CG, Zhu Q. Cancer based pharmacogenomics network for drug repurposing. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 2014; 8643:639-51.
  55. Zhu Q, Liu H, Chute CG, Ferber M. Genetic testing knowledge base (GTKB) towards individualized genetic test recommendation - An experimental study. Proceedings - 2014 IEEE International Conference on Bioinformatics and Biomedicine, IEEE BIBM 2014. 2014:574-7.
  56. Chute CG, Hart LA, Alexander AK, Jensen DW. The Southeastern Minnesota Beacon Project for Community-driven Health Information Technology: Origins, Achievements, and Legacy. EGEMS (Wash DC). 2014; 2: (3)1101.
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  57. Masanz J, Pakhomov SV, Xu H, Wu ST, Chute CG, Liu H. Open Source Clinical NLP - More than Any Single System. AMIA Jt Summits Transl Sci Proc. 2014; 2014:76-82.
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  58. Haug PJ, Wu X, Ferraro JP, Savova GK, Huff SM, Chute CG. Developing a section labeler for clinical documents. AMIA Annu Symp Proc. 2014; 2014:636-44.
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  59. Freimuth RR, Zhu Q, Pathak J, Chute CG. Simplifying complex clinical element models to encourage adoption. AMIA Jt Summits Transl Sci Proc. 2014; 2014:26-31.
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  60. Pathak J, Simon G, Li D, Biernacka JM, Jenkins GJ, Chute CG, Hall-Flavin DK, Weinshilboum RM. Detecting Associations between Major Depressive Disorder Treatment and Essential Hypertension using Electronic Health Records. AMIA Jt Summits Transl Sci Proc. 2014; 2014:91-6.
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  61. Jonnalagadda SR, Moosavinasab S, Nath C, Li D, Chute CG, Liu H. An automated approach for ranking journals to help in clinician decision support. AMIA Annu Symp Proc. 2014; 2014:757-66.
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  62. Overby CL, Rasmussen LV, Hartzler A, Connolly JJ, Peterson JF, Hedberg RE, Freimuth RR, Shirts BH, Denny JC, Larson EB, Chute CG, Jarvik GP, Ralston JD, Shuldiner AR, Starren J, Kullo IJ, Tarczy-Hornoch P, Williams MS. A Template for Authoring and Adapting Genomic Medicine Content in the eMERGE Infobutton Project. AMIA Annu Symp Proc. 2014; 2014:944-53 Epub 2014 Nov 14
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  63. Li DC, Thermeau T, Chute C, Liu H. Discovering associations among diagnosis groups using topic modeling. AMIA Jt Summits Transl Sci Proc. 2014; 2014:43-9.
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  64. Wang C, Zimmermann MT, Prodduturi N, Chute CG, Jiang G. Adverse Drug Event-based Stratification of Tumor Mutations: A Case Study of Breast Cancer Patients Receiving Aromatase Inhibitors. AMIA Annu Symp Proc. 2014; 2014:1160-9.
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  65. Freimuth RR, Wix K, Zhu Q, Siska M, Chute CG. Evaluation of RxNorm for Medication Clinical Decision Support. AMIA Annu Symp Proc. 2014; 2014:554-63.
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  66. Mea VD, Vuattolo O, Ustun BT, Rector A, Schulz S, Rodrigues JM, Spackman K, Robinson D, Millar J, Campbell JR, Chute CG, Solbrig HR, Persson KB. A web-based tool for development of a common ontology between ICD11 and SNOMED-CT. Proceedings - 2014 IEEE International Conference on Healthcare Informatics, ICHI 2014. 2014; 144-8.
  67. Pathak J, Bailey KR, Beebe CE, Bethard S, Carrell DC, Chen PJ, Dligach D, Endle CM, Hart LA, Haug PJ, Huff SM, Kaggal VC, Li D, Liu H, Marchant K, Masanz J, Miller T, Oniki TA, Palmer M, Peterson KJ, Rea S, Savova GK, Stancl CR, Sohn S, Solbrig HR, Suesse DB, Tao C, Taylor DP, Westberg L, Wu S, Zhuo N, Chute CG. Normalization and standardization of electronic health records for high-throughput phenotyping: the SHARPn consortium. J Am Med Inform Assoc. 2013 Dec; 20: (e2)e341-8.
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  68. Overby CL, Pathak J, Gottesman O, Haerian K, Perotte A, Murphy S, Bruce K, Johnson S, Talwalkar J, Shen Y, Ellis S, Kullo I, Chute C, Friedman C, Bottinger E, Hripcsak G, Weng C. A collaborative approach to developing an electronic health record phenotyping algorithm for drug-induced liver injury. J Am Med Inform Assoc. 2013 Dec; 20(e2):e243-52. Epub 2013 Jul 09.
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  69. Ludvigsson JF, Pathak J, Murphy S, Durski M, Kirsch PS, Chute CG, Ryu E, Murray JA. Use of computerized algorithm to identify individuals in need of testing for celiac disease. J Am Med Inform Assoc. 2013 Dec; 20(e2):e306-10. Epub 2013 Aug 16.
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  70. Denny JC, Bastarache L, Ritchie MD, Carroll RJ, Zink R, Mosley JD, Field JR, Pulley JM, Ramirez AH, Bowton E, Basford MA, Carrell DS, Peissig PL, Kho AN, Pacheco JA, Rasmussen LV, Crosslin DR, Crane PK, Pathak J, Bielinski SJ, Pendergrass SA, Xu H, Hindorff LA, Li R, Manolio TA, Chute CG, Chisholm RL, Larson EB, Jarvik GP, Brilliant MH, McCarty CA, Kullo IJ, Haines JL, Crawford DC, Masys DR, Roden DM. Systematic comparison of phenome-wide association study of electronic medical record data and genome-wide association study data. Nat Biotechnol. 2013 Dec; 31(12):1102-10.
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  71. Ridgeway JL, Beebe TJ, Chute CG, Eton DT, Hart LA, Frost MH, Jensen D, Montori VM, Smith JG, Smith SA, Tan AD, Yost KJ, Ziegenfuss JY, Sloan JA. A brief Patient-Reported Outcomes Quality of Life (PROQOL) instrument to improve patient care. PLoS Med. 2013 Nov; 10(11):e1001548. Epub 2013 Nov 12.
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  72. Tao C, Song D, Sharma D, Chute CG. Semantator: semantic annotator for converting biomedical text to linked data. J Biomed Inform. 2013 Oct; 46: (5)882-93.
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  73. Chute CG, Ullman-Cullere M, Wood GM, Lin SM, He M, Pathak J. Some experiences and opportunities for big data in translational research. Genet Med. 2013 Oct; 15: (10)802-9.
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  74. Gottesman O, Kuivaniemi H, Tromp G, Faucett WA, Li R, Manolio TA, Sanderson SC, Kannry J, Zinberg R, Basford MA, Brilliant M, Carey DJ, Chisholm RL, Chute CG, Connolly JJ, Crosslin D, Denny JC, Gallego CJ, Haines JL, Hakonarson H, Harley J, Jarvik GP, Kohane I, Kullo IJ, Larson EB, McCarty C, Ritchie MD, Roden DM, Smith ME, Bottinger EP, Williams MS, eMERGE Network. The Electronic Medical Records and Genomics (eMERGE) Network: past, present, and future. Genet Med. 2013 Oct; 15: (10)761-71.
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  75. Zhu Q, Freimuth RR, Pathak J, Durski MJ, Chute CG. Disambiguation of PharmGKB drug-disease relations with NDF-RT and SPL. J Biomed Inform. 2013 Aug; 46: (4)690-6.
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  76. Shuldiner AR, Relling MV, Peterson JF, Hicks JK, Freimuth RR, Sadee W, Pereira NL, Roden DM, Johnson JA, Klein TE, Pharmacogenomics Research Network Translational Pharmacogenetics Program Group, Shuldiner AR, Vesely M, Robinson SW, Ambulos N Jr, Stass SA, Kelemen MD, Brown LA, Pollin TI, Beitelshees AL, Zhao RY, Pakyz RE, Palmer K, Alestock T, O'Neill C, Maloney K, Branham A, Sewell D, Relling MV, Crews K, Hoffman J, Cross S, Haidar C, Baker D, Hicks JK, Bell G, Greeson F, Gaur A, Reiss U, Huettel A, Cheng C, Gajjar A, Pappo A, Howard S, Hudson M, Pui CH, Jeha S, Evans WE, Broeckel U, Altman RB, Gong L, Whirl-Carrillo M, Klein TE, Sadee W, Manickam K, Sweet KM, Embi PJ, Roden D, Peterson J, Denny J, Schildcrout J, Bowton E, Pulley J, Beller M, Mitchell J, Danciu I, Price L, Pereira NL, Weinshilboum R, Wang L, Johnson JA, Nelson D, Clare-Salzler M, Elsey A, Burkley B, Langaee T, Liu F, Nessl D, Dong HJ, Lesko L, Freimuth RR, Chute CG. The Pharmacogenomics Research Network Translational Pharmacogenetics Program: overcoming challenges of real-world implementation. Clin Pharmacol Ther. 2013 Aug; 94(2):207-10. Epub 2013 Mar 19.
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  77. Chute CG. Coding patient information, reimbursement for care, and the ICD transition. Virtual Mentor. 2013 Jul; 15(7):596-9. Epub 2013 Jul 01.
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  78. Newton KM, Peissig PL, Kho AN, Bielinski SJ, Berg RL, Choudhary V, Basford M, Chute CG, Kullo IJ, Li R, Pacheco JA, Rasmussen LV, Spangler L, Denny JC. Validation of electronic medical record-based phenotyping algorithms: results and lessons learned from the eMERGE network. J Am Med Inform Assoc. 2013 Jun; 20(e1):e147-54. Epub 2013 Mar 26.
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  79. Tao C, Jiang G, Oniki TA, Freimuth RR, Zhu Q, Sharma D, Pathak J, Huff SM, Chute CG. A semantic-web oriented representation of the clinical element model for secondary use of electronic health records data. J Am Med Inform Assoc. 2013 May 01; 20: (3)554-62.
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  80. Jiang G, Solbrig HR, Chute CG. Using Semantic Web technology to support icd-11 textual definitions authoring. J Biomed Semantics. 2013 Apr 21; 4: (1)11.
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  81. Chute CG, Kohane IS. Genomic medicine, health information technology, and patient care. JAMA. 2013 Apr 10; 309: (14)1467-8.
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  82. Ritchie MD, Denny JC, Zuvich RL, Crawford DC, Schildcrout JS, Bastarache L, Ramirez AH, Mosley JD, Pulley JM, Basford MA, Bradford Y, Rasmussen LV, Pathak J, Chute CG, Kullo IJ, McCarty CA, Chisholm RL, Kho AN, Carlson CS, Larson EB, Jarvik GP, Sotoodehnia N, Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) QRS Group, Manolio TA, Li R, Masys DR, Haines JL, Roden DM. Genome- and phenome-wide analyses of cardiac conduction identifies markers of arrhythmia risk. Circulation. 2013 Apr 2; 127(13):1377-85. Epub 2013 Mar 05.
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  83. Wei WQ, Leibson CL, Ransom JE, Kho AN, Chute CG. The absence of longitudinal data limits the accuracy of high-throughput clinical phenotyping for identifying type 2 diabetes mellitus subjects. Int J Med Inform. 2013 Apr; 82(4):239-47. Epub 2012 Jul 02.
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  84. Zhu Q, Freimuth RR, Lian Z, Bauer S, Pathak J, Tao C, Durski MJ, Chute CG. Harmonization and semantic annotation of data dictionaries from the Pharmacogenomics Research Network: a case study. J Biomed Inform. 2013 Apr; 46: (2)286-93.
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  85. Tao C, Pathak J, Solbrig HR, Wei WQ, Chute CG. Terminology representation guidelines for biomedical ontologies in the semantic web notations. J Biomed Inform. 2013 Feb; 46: (1)128-38.
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  86. Wu ST, Kaggal VC, Dligach D, Masanz JJ, Chen P, Becker L, Chapman WW, Savova GK, Liu H, Chute CG. A common type system for clinical natural language processing. J Biomed Semantics. 2013 Jan 03; 4: (1)1.
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  87. Seedorff M, Peterson KJ, Nelsen LA, Cocos C, McCormick JB, Chute CG, Pathak J. Incorporating expert terminology and disease risk factors into consumer health vocabularies. Pac Symp Biocomput. 2013; 421-32.
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  88. Sohn S, Clark C, Halgrim SR, Murphy SP, Jonnalagadda SR, Wagholikar KB, Wu ST, Chute CG, Liu H. Analysis of cross-institutional medication description patterns in clinical narratives. Biomed Inform Insights. 2013; 6: (Suppl 1)7-16.
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  89. Pathak J, Kiefer RC, Chute CG. Mining anti-coagulant drug-drug interactions from electronic health records using linked data. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 2013; 7970 LNBI:128-40.
  90. Pathak J, Kiefer RC, Chute CG. Using linked data for mining drug-drug interactions in electronic health records. Stud Health Technol Inform. 2013; 192:682-6.
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  91. Zhu Q, Jiang G, Wang L, Chute CG. Standardized drug and pharmacological class network construction. Stud Health Technol Inform. 2013; 192:1125.
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  92. Jiang G, Wang L, Liu H, Solbrig HR, Chute CG. Building a knowledge base of severe adverse drug events based on AERS reporting data using semantic web technologies. Stud Health Technol Inform. 2013; 192:496-500.
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  93. Rodrigues JM, Schulz S, Rector A, Spackman K, Ustun B, Chute CG, Della Mea V, Millar J, Persson KB. Sharing ontology between ICD 11 and SNOMED CT will enable seamless re-use and semantic interoperability. Stud Health Technol Inform. 2013; 192:343-6.
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  94. Rodrigues JM, Schulz S, Rector A, Spackman K, Ustun B, Chute CG, Della Mea V, Millar J, Brand Persson K, Kalra D. Do we need a Common Ontology between ICD 11 and SNOMED CT to ensure Seamless Re-Use and Semantic Interoperability? Stud Health Technol Inform. 2013; 192:1234.
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  95. Martinez-Costa C, Bosca D, Legaz-Garcia MC, Tao C, Fernandez Breis JT, Schulz S, Chute CG. Isosemantic rendering of clinical information using formal ontologies and RDF. Stud Health Technol Inform. 2013; 192:1085.
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  96. Tao C, Li D, Shen F, Lian Z, Pathak J, Liu H, Chute CG. Phenotyping on EHR data using OWL and semantic web technologies. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 2013; 8040 LNCS:31-2.
  97. Zhu Q, Freimuth RR, Pathak J, Chute CG. Using clinical element models for pharmacogenomic study data standardization. AMIA Jt Summits Transl Sci Proc. 2013; 2013:292-6.
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  98. Jiang G, Liu H, Solbrig HR, Chute CG. ADEpedia 2.0: Integration of Normalized Adverse Drug Events (ADEs) Knowledge from the UMLS. AMIA Jt Summits Transl Sci Proc. 2013; 2013:100-4.
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  99. Jiang G, Wang C, Zhu Q, Chute CG. A Framework of Knowledge Integration and Discovery for Supporting Pharmacogenomics Target Predication of Adverse Drug Events: A Case Study of Drug-Induced Long QT Syndrome. AMIA Jt Summits Transl Sci Proc. 2013; 2013:88-92.
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  100. Li D, Simon G, Chute CG, Pathak J. Using association rule mining for phenotype extraction from electronic health records. AMIA Jt Summits Transl Sci Proc. 2013; 2013:142-6.
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  101. Zhu Q, Freimuth RR, Pathak J, Chute CG. PharmGKB Drug Data Normalization with NDF-RT. AMIA Jt Summits Transl Sci Proc. 2013; 2013:180.
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  102. Kiefer RC, Freimuth RR, Chute CG, Pathak J. Mining Genotype-Phenotype Associations from Public Knowledge Sources via Semantic Web Querying. AMIA Jt Summits Transl Sci Proc. 2013; 2013:118-22.
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  103. Sohn S, Ye Z, Liu H, Chute CG, Kullo IJ. Identifying Abdominal Aortic Aneurysm Cases and Controls using Natural Language Processing of Radiology Reports. AMIA Summits Transl Sci Proc. 2013; 2013:249-53. Epub 2013 Mar 18.
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  104. Liu H, Bielinski SJ, Sohn S, Murphy S, Wagholikar KB, Jonnalagadda SR, Ravikumar KE, Wu ST, Kullo IJ, Chute CG. An information extraction framework for cohort identification using electronic health records. AMIA Summits Transl Sci Proc. 2013; 2013:149-53. Epub 2013 Mar 18
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  105. Ranallo PA, Adam TJ, Nelson KJ, Krueger RF, LaVenture M, Chute CG. Psychological assessment instruments: a coverage analysis using SNOMED CT, LOINC and QS terminology. AMIA Annu Symp Proc. 2013; 2013:1333-40.
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  106. Li DC, Ning X, Sohn S, Chute CG, Cohen K, Liu H. Incorporating Topic Modeling Features For Clinical Concept Assertion Classification. The Proc of the 5th International Symposium on Languages in Biology and Medicine. 2013.
  107. Li DC, Liu H, Chute CG, Jonnalagadda SR. Towards assigning references using semantic, journal and citation relevance. Proceedings - 2013 IEEE International Conference on Bioinformatics and Biomedicine, IEEE BIBM 2013. 2013:499-503.
  108. Jonnalagadda SR, Moosavinasab S, Li D, Abel MD, Chute CG, Liu H. Prioritizing journals relevant to a topic for addressing clinicians' information needs. Proceedings - 2013 IEEE International Conference on Bioinformatics and Biomedicine, IEEE BIBM 2013. 2013:5-6.
  109. Pathak J, Kiefer RC, Chute CG. Mining drug-drug interaction patterns from linked data: A case study for Warfarin, Clopidogrel, and Simvastatin. Proceedings - 2013 IEEE International Conference on Bioinformatics and Biomedicine, IEEE BIBM 2013. 2013; 23-30.
  110. Jiang G, Evans J, Endle CM, Solbrig HR, Chute CG. Using semantic web technologies for the generation of domain templates to support clinical study meta-data standards. CEUR Workshop Proceedings. 2013; 1114.
  111. Clark K, Sharma D, Qin R, Jiang G, Chute CG, Tao C. Ontology-based temporal analysis for medical device adverse event- A use case study on Late Stent Thrombosis. CEUR Workshop Proceedings. 2013; 1114.
  112. Zhu Q, Jiang G, Wang L, Chute CG. Standardized drug and pharmacological class network construction. CEUR Workshop Proceedings. 2013; 1061.
  113. Jiang G, Solbrig HR, Chute CG. A semantic web-based approach for harvesting multilingual textual definitions from wikipedia to support ICD-11 revision. CEUR Workshop Proceedings. 2013; 1061.
  114. Zhu Q, Jiang G, Chute CG. Profiling structured product labeling with NDF-RT and RxNorm. J Biomed Semantics. 2012 Dec 20; 3: (1)16.
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  115. Tao C, He Y, Yang H, Poland GA, Chute CG. Ontology-based time information representation of vaccine adverse events in VAERS for temporal analysis. J Biomed Semantics. 2012 Dec 20; 3: (1)13.
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  116. Pathak J, Kiefer RC, Bielinski SJ, Chute CG. Applying semantic web technologies for phenome-wide scan using an electronic health record linked Biobank. J Biomed Semantics. 2012 Dec 17; 3: (1)10.
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  117. Zhu Q, Tao C, Ding Y, Chute CG. Time-related patient data retrieval for the case studies from the pharmacogenomics research network. J Med Syst. 2012 Nov; 36 Suppl 1:S37-42.
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  118. Rea S, Pathak J, Savova G, Oniki TA, Westberg L, Beebe CE, Tao C, Parker CG, Haug PJ, Huff SM, Chute CG. Building a robust, scalable and standards-driven infrastructure for secondary use of EHR data: the SHARPn project. J Biomed Inform. 2012 Aug; 45(4):763-71. Epub 2012 Feb 04.
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  119. Saitwal H, Qing D, Jones S, Bernstam EV, Chute CG, Johnson TR. Cross-terminology mapping challenges: a demonstration using medication terminological systems. J Biomed Inform. 2012 Aug; 45(4):613-25. Epub 2012 Jun 28.
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  120. Savova GK, Olson JE, Murphy SP, Cafourek VL, Couch FJ, Goetz MP, Ingle JN, Suman VJ, Chute CG, Weinshilboum RM. Automated discovery of drug treatment patterns for endocrine therapy of breast cancer within an electronic medical record. J Am Med Inform Assoc. 2012 Jun; 19: (e1)e83-9.
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  121. Wu ST, Liu H, Li D, Tao C, Musen MA, Chute CG, Shah NH. Unified Medical Language System term occurrences in clinical notes: a large-scale corpus analysis. J Am Med Inform Assoc. 2012 Jun; 19: (e1)e149-56.
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  122. Jiang G, Solbrig HR, Chute CG. Quality evaluation of value sets from cancer study common data elements using the UMLS semantic groups. J Am Med Inform Assoc. 2012 Jun; 19: (e1)e129-36.
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  123. Ding K, Shameer K, Jouni H, Masys DR, Jarvik GP, Kho AN, Ritchie MD, McCarty CA, Chute CG, Manolio TA, Kullo IJ. Genetic Loci implicated in erythroid differentiation and cell cycle regulation are associated with red blood cell traits. Mayo Clin Proc. 2012 May; 87: (5)461-74.
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  124. Chute CG, Huff SM, Ferguson JA, Walker JM, Halamka JD. There are important reasons for delaying implementation of the new ICD-10 coding system. Health Aff (Millwood). 2012 Apr; 31(4):836-42. Epub 2012 Mar 21.
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  125. Wei WQ, Leibson CL, Ransom JE, Kho AN, Caraballo PJ, Chai HS, Yawn BP, Pacheco JA, Chute CG. Impact of data fragmentation across healthcare centers on the accuracy of a high-throughput clinical phenotyping algorithm for specifying subjects with type 2 diabetes mellitus. J Am Med Inform Assoc. 2012 Mar-Apr; 19(2):219-24. Epub 2012 Jan 16.
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  126. Kho AN, Hayes MG, Rasmussen-Torvik L, Pacheco JA, Thompson WK, Armstrong LL, Denny JC, Peissig PL, Miller AW, Wei WQ, Bielinski SJ, Chute CG, Leibson CL, Jarvik GP, Crosslin DR, Carlson CS, Newton KM, Wolf WA, Chisholm RL, Lowe WL. Use of diverse electronic medical record systems to identify genetic risk for type 2 diabetes within a genome-wide association study. J Am Med Inform Assoc. 2012 Mar-Apr; 19(2):212-8. Epub 2011 Nov 19.
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  127. Musen MA, Noy NF, Shah NH, Whetzel PL, Chute CG, Story MA, Smith B, NCBO team. The National Center for Biomedical Ontology. J Am Med Inform Assoc. 2012 Mar-Apr; 19(2):190-5. Epub 2011 Nov 10.
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  128. Pathak J, Weiss LC, Durski MJ, Zhu Q, Freimuth RR, Chute CG. Integrating VA's NDF-RT drug terminology with PharmGKB: preliminary results. Pac Symp Biocomput. 2012; 400-9.
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  129. Pathak J, Kiefer RC, Chute CG. Applying Linked Data principles to represent patient's electronic health records at Mayo Clinic: A case report. IHI'12 - Proceedings of the 2nd ACM SIGHIT International Health Informatics Symposium. 2012:455-64.
  130. Tao C, Wongsuphasawat K, Clark K, Plaisant C, Shneiderman B, Chute CG. Towards event sequence representation, reasoning and visualization for EHR data. IHI'12 - Proceedings of the 2nd ACM SIGHIT International Health Informatics Symposium. 2012:801-5.
  131. Jiang G, Solbrig HR, Chute CG. Using semantic web technology to support ICD-11 textual definitions authoring. ACM International Conference Proceeding Series. 2012; 38-44.
  132. Pathak J, Kiefer RC, Chute CG. The Linked Clinical Data project: Applying Semantic Web technologies for clinical and translational research using electronic medical records. ACM International Conference Proceeding Series. 2012; 94-5.
  133. Tao C, Noy NF, Solbrig HR, Shah NH, Musen MA, Chute CG. Proposed SKOS extensions for bioportal terminology services. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 2012; 7185 LNCS:342-9.
  134. Sohn S, Wu S, Chute CG. Dependency Parser-based Negation Detection in Clinical Narratives. AMIA Jt Summits Transl Sci Proc. 2012; 2012:1-8.
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  135. Pathak J, Kiefer RC, Chute CG. Using semantic web technologies for cohort identification from electronic health records for clinical research. AMIA Jt Summits Transl Sci Proc. 2012; 2012:10-9.
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  136. Song D, Chute CG, Tao C. Semantator: annotating clinical narratives with semantic web ontologies. AMIA Jt Summits Transl Sci Proc. 2012; 2012:20-9.
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  137. Pathak J, Kiefer R, Freimuth R, Chute C. Validation and discovery of genotype-phenotype associations in chronic diseases using linked data. Stud Health Technol Inform. 2012; 180:549-53.
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  138. Jiang G, Evans J, Oniki T, Coyle J, Bain L, Huff S, Kush R, Chute CG. Harmonization of detailed clinical models with clinical study data standards. International Conference on Information and Knowledge Management, Proceedings. 2012:23-30.
  139. Tao C, Zhang Y, Jiang G, Bouamrane MM, Chute CG. Optimizing semantic MEDLINE for translational science studies using semantic web technologies. International Conference on Information and Knowledge Management, Proceedings. 2012:53-7.
  140. Liu H, Wu S, Tao C, Chute C. Modeling UIMA type system using web ontology language - Towards interoperability among UIMA-based NLP tools. International Conference on Information and Knowledge Management, Proceedings. 2012:31-6.
  141. Li D, Endle CM, Murthy S, Stancl C, Suesse D, Sottara D, Huff SM, Chute CG, Pathak J. Modeling and executing electronic health records driven phenotyping algorithms using the NQF Quality Data Model and JBoss(R) Drools Engine. AMIA Annu Symp Proc. 2012; 2012:532-41.
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  142. Liu H, Wu ST, Li D, Jonnalagadda S, Sohn S, Wagholikar K, Haug PJ, Huff SM, Chute CG. Towards a semantic lexicon for clinical natural language processing. AMIA Annu Symp Proc. 2012; 2012:568-76.
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  143. Pathak J, Kiefer RC, Bielinski SJ, Chute CG. Mining the human phenome using semantic web technologies: a case study for Type 2 Diabetes. AMIA Annu Symp Proc. 2012; 2012:699-708.
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  144. Sohn S, Murphy SP, Jonnalagadda SR, Wagholikar K, Wu ST, Chute CG, Liu H, Halgrim S. Systematic analysis of cross-institutional medication description patterns in clinical notes. Proceedings - 2012 IEEE 2nd Conference on Healthcare Informatics, Imaging and Systems Biology, HISB 2012. 2012:118.
  145. Li D, Tao C, Liu H, Chute C. Ontology-based temporal relation modeling with map-reduce latent dirichlet allocations for big EHR data. Proceedings - 2nd International Conference on Cloud and Green Computing and 2nd International Conference on Social Computing and Its Applications, CGC/SCA 2012. 2012; 708-15.
  146. Jiang G, Solbrig HR, Chute CG. Building standardized Semantic Web RESTful services to support ICD-11 revision. CEUR Workshop Proceedings. 2012; 952.
  147. Jiang G, Solbrig HR, Chute CG. Quality evaluation of cancer study Common Data Elements using the UMLS Semantic Network. J Biomed Inform. 2011 Dec; 44 Suppl 1:S78-85. Epub 2011 Aug 05.
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  148. Sohn S, Kocher JP, Chute CG, Savova GK. Drug side effect extraction from clinical narratives of psychiatry and psychology patients. J Am Med Inform Assoc. 2011 Dec; 18 Suppl 1:i144-9. Epub 2011 Sep 21.
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  149. Tao C, Noy NF, Solbrig HR, Shah NH, Musen MA, Chute CG. Proposed SKOS Extensions for BioPortal Terminology Services Lecture Notes in Computer Science. 2011 Dec; 7185.
  150. Denny JC, Crawford DC, Ritchie MD, Bielinski SJ, Basford MA, Bradford Y, Chai HS, Bastarache L, Zuvich R, Peissig P, Carrell D, Ramirez AH, Pathak J, Wilke RA, Rasmussen L, Wang X, Pacheco JA, Kho AN, Hayes MG, Weston N, Matsumoto M, Kopp PA, Newton KM, Jarvik GP, Li R, Manolio TA, Kullo IJ, Chute CG, Chisholm RL, Larson EB, McCarty CA, Masys DR, Roden DM, de Andrade M. Variants near FOXE1 are associated with hypothyroidism and other thyroid conditions: using electronic medical records for genome- and phenome-wide studies. Am J Hum Genet. 2011 Oct 7; 89(4):529-42.
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  151. Song D, Chute CG, Tao C. Semantator: A Semi-automatic Semantic Annotation Tool for Clinical Narratives. International Semantic Web Conference (ISWC). 2011 Oct.
  152. Kullo IJ, Ding K, Shameer K, McCarty CA, Jarvik GP, Denny JC, Ritchie MD, Ye Z, Crosslin DR, Chisholm RL, Manolio TA, Chute CG. Complement receptor 1 gene variants are associated with erythrocyte sedimentation rate. Am J Hum Genet. 2011 Jul 15; 89: (1)131-8.
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  153. Pathak J, Wang J, Kashyap S, Basford M, Li R, Masys DR, Chute CG. Mapping clinical phenotype data elements to standardized metadata repositories and controlled terminologies: the eMERGE Network experience. J Am Med Inform Assoc. 2011 Jul-Aug; 18: (4)376-86.
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  154. Bielinski SJ, Chai HS, Pathak J, Talwalkar JA, Limburg PJ, Gullerud RE, Sicotte H, Klee EW, Ross JL, Kocher JP, Kullo IJ, Heit JA, Petersen GM, de Andrade M, Chute CG. Mayo Genome Consortia: a genotype-phenotype resource for genome-wide association studies with an application to the analysis of circulating bilirubin levels. Mayo Clin Proc. 2011 Jul; 86: (7)606-14.
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  155. Kho AN, Pacheco JA, Peissig PL, Rasmussen L, Newton KM, Weston N, Crane PK, Pathak J, Chute CG, Bielinski SJ, Kullo IJ, Li R, Manolio TA, Chisholm RL, Denny JC. Electronic medical records for genetic research: results of the eMERGE consortium. Sci Transl Med. 2011 Apr 20; 3(79):79re1.
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  156. Pakhomov SV, Pedersen T, McInnes B, Melton GB, Ruggieri A, Chute CG. Towards a framework for developing semantic relatedness reference standards. J Biomed Inform. 2011 Apr; 44(2):251-65. Epub 2010 Oct 31.
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  157. Liu K, Chapman WW, Savova G, Chute CG, Sioutos N, Crowley RS. Effectiveness of lexico-syntactic pattern matching for ontology enrichment with clinical documents. Methods Inf Med. 2011; 50(5):397-407. Epub 2010 Nov 08.
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  158. Clark KK, Sharma DK, Chute CG, Tao C. Application of a temporal reasoning framework tool in analysis of medical device adverse events. AMIA Annu Symp Proc. 2011; 2011:1366-71. Epub 2011 Oct 22.
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  159. Tao C, Jiang G, Wei W, Solbrig HR, Chute CG. Towards Semantic-Web Based Representation and Harmonization of Standard Meta-data Models for Clinical Studies. AMIA Jt Summits Transl Sci Proc. 2011; 2011:59-63.
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  160. Chute CG, Pathak J, Savova GK, Bailey KR, Schor MI, Hart LA, Beebe CE, Huff SM. The SHARPn project on secondary use of Electronic Medical Record data: progress, plans, and possibilities. AMIA Annu Symp Proc. 2011; 2011:248-56.
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  161. Pathak J, Pan H, Wang J, Kashyap S, Schad PA, Hamilton CM, Masys DR, Chute CG. Evaluating Phenotypic Data Elements for Genetics and Epidemiological Research: Experiences from the eMERGE and PhenX Network Projects. AMIA Jt Summits Transl Sci Proc. 2011; 2011:41-5.
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  162. Jiang G, Solbrig HR, Chute CG. ADEpedia: a scalable and standardized knowledge base of Adverse Drug Events using semantic web technology. AMIA Annu Symp Proc. 2011; 2011:607-16.
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  163. Conway M, Berg RL, Carrell D, Denny JC, Kho AN, Kullo IJ, Linneman JG, Pacheco JA, Peissig P, Rasmussen L, Weston N, Chute CG, Pathak J. Analyzing the heterogeneity and complexity of Electronic Health Record oriented phenotyping algorithms. AMIA Annu Symp Proc. 2011; 2011:274-83.
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  164. Tao C, Solbrig HR, Chute CG. CNTRO 2.0: A Harmonized Semantic Web Ontology for Temporal Relation Inferencing in Clinical Narratives. AMIA Jt Summits Transl Sci Proc. 2011; 2011:64-8.
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  165. Pathak J, Murphy SP, Willaert BN, Kremers HM, Yawn BP, Rocca WA, Chute CG. Using RxNorm and NDF-RT to classify medication data extracted from electronic health records: experiences from the Rochester Epidemiology Project. AMIA Annu Symp Proc. 2011; 2011:1089-98.
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  166. Tao C, Pathak J, Welch SR, Bouamrane MM, Huff SM, Chute CG. Toward semantic web based knowledge representation and extraction from electronic health records. International Conference on Information and Knowledge Management, Proceedings. 2011:75-8.
  167. Wu ST, Kaggal VC, Savova GK, Liu H, Dligach D, Zheng J, Chapman WW, Chute CG. Generality and reuse in a common type system for clinical natural language processing. International Conference on Information and Knowledge Management, Proceedings. 2011:27-34.
  168. Tao C, Parker CG, Oniki TA, Pathak J, Huff SM, Chute CG. An OWL meta-ontology for representing the Clinical Element Model. AMIA Annu Symp Proc. 2011; 2011:1372-81.
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  169. Tao C, Jiang G, Clark K, Sharma D, Chute CG. Toward answering time-related questions from adverse event reports using ontology-based approaches. CEUR Workshop Proceedings. 2011; 833:332-4.
  170. Whetzel PL, Noy N, Shah N, Alexander P, Dorf M, Fergerson R, Storey MA, Smith B, Chute C, Musen M. BioPortal: Ontologies and integrated data resources at the click of a mouse. CEUR Workshop Proceedings. 2011; 833:292-3.
  171. Jiang G, Solbrig HR, Chalmers RJG, Spackman K, Rector AL, Chute CG. A case study of ICD-11 anatomy value set extraction from SNOMED CT. CEUR Workshop Proceedings. 2011; 833:133-8.
  172. Jiang G, Duke JD, Pathak J, Chute CG. An ontological representation of adverse drug events. CEUR Workshop Proceedings. 2011; 833:329-31.
  173. Schildcrout JS, Basford MA, Pulley JM, Masys DR, Roden DM, Wang D, Chute CG, Kullo IJ, Carrell D, Peissig P, Kho A, Denny JC. An analytical approach to characterize morbidity profile dissimilarity between distinct cohorts using electronic medical records. J Biomed Inform. 2010 Dec; 43(6):914-23. Epub 2010 Aug 03.
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  174. Wei WQ, Tao C, Jiang G, Chute CG. A high throughput semantic concept frequency based approach for patient identification: a case study using type 2 diabetes mellitus clinical notes. AMIA Annu Symp Proc. 2010 Nov 13; 2010:857-61.
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  175. Tao C, Wei WQ, Solbrig HR, Savova G, Chute CG. CNTRO: A Semantic Web Ontology for Temporal Relation Inferencing in Clinical Narratives. AMIA Annu Symp Proc. 2010 Nov 13; 2010:787-91.
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  176. Pathak J, Peters L, Chute CG, Bodenreider O. Comparing and evaluating terminology services application programming interfaces: RxNav, UMLSKS and LexBIG. J Am Med Inform Assoc. 2010 Nov-Dec; 17: (6)714-9.
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  177. Kullo IJ, Ding K, Jouni H, Smith CY, Chute CG. A genome-wide association study of red blood cell traits using the electronic medical record. PLoS One. 2010 Sep 28; 5: (9).
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  178. Kullo IJ, Fan J, Pathak J, Savova GK, Ali Z, Chute CG. Leveraging informatics for genetic studies: use of the electronic medical record to enable a genome-wide association study of peripheral arterial disease. J Am Med Inform Assoc. 2010 Sep-Oct; 17: (5)568-74.
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  179. Savova GK, Masanz JJ, Ogren PV, Zheng J, Sohn S, Kipper-Schuler KC, Chute CG. Mayo clinical Text Analysis and Knowledge Extraction System (cTAKES): architecture, component evaluation and applications. J Am Med Inform Assoc. 2010 Sep-Oct; 17(5):507-13.
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  180. Jiang G, Solbrig H, Chute CG. Mash-up of LexWiki and Web-Protege for Distributed Authoring of Large-Scale Biomedical Terminologies. Proceedings of the 18th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB 2010) - Bio-Ontologies 2010: Semantic Applications in Life Sciences.. July 9-10, 2010; 132-35.
  181. Pathak J, Chute CG. Analyzing categorical information in two publicly available drug terminologies: RxNorm and NDF-RT. J Am Med Inform Assoc. 2010 Jul-Aug; 17: (4)432-9.
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  182. Chute CG, Beck SA, Fisk TB, Mohr DN. The Enterprise Data Trust at Mayo Clinic: a semantically integrated warehouse of biomedical data. J Am Med Inform Assoc. 2010 Mar-Apr; 17: (2)131-5.
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  183. Chute CG. Distributed biomedical terminology development: from experiments to open process. Yearb Med Inform. 2010; 58-63.
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  184. Jiang G, Solbrig HR, Iberson-Hurst D, Kush RD, Chute CG. A Collaborative Framework for Representation and Harmonization of Clinical Study Data Elements Using Semantic MediaWiki. AMIA Summits Transl Sci Proc. 2010; 2010:11-5. Epub 2010 Mar 01.
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  185. Savova GK, Fan J, Ye Z, Murphy SP, Zheng J, Chute CG, Kullo IJ. Discovering peripheral arterial disease cases from radiology notes using natural language processing. AMIA Annu Symp Proc. 2010; 2010:722-6. Epub 2010 Nov 13.
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  186. Tao C, Solbrig HR, Sharma DK, Wei WQ, Savova GK, Chute CG. Time-Oriented Question Answering from Clinical Narratives Using Semantic-Web Techniques. Lect Notes Comput Sci. 2010; 6497:241-56.
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  187. Jiang G, Solbrig HR, Chute CG. Mash-up of lexwiki and web-protg for distributed authoring of large-scale biomedical terminologies. CEUR Workshop Proceedings. 2010; 754.
  188. Tao C, Pathak J, Solbrig HR, Wei WQ, Chute CG. LexRDF Model: An RDF-based Unified Model for Heterogeneous Biomedical Ontologies. CEUR Workshop Proc. 2009 Oct 26; 521:3.
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  189. Katipamula R, Degnim AC, Hoskin T, Boughey JC, Loprinzi C, Grant CS, Brandt KR, Pruthi S, Chute CG, Olson JE, Couch FJ, Ingle JN, Goetz MP. Trends in mastectomy rates at the Mayo Clinic Rochester: effect of surgical year and preoperative magnetic resonance imaging. J Clin Oncol. 2009 Sep 1; 27: (25)4082-8.
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  190. Pathak J, Johnson TM, Chute CG. Survey of modular ontology techniques and their applications in the biomedical domain. Integr Comput Aided Eng. 2009 Aug; 16: (3)225-242.
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  191. Noy NF, Shah NH, Whetzel PL, Dai B, Dorf M, Griffith N, Jonquet C, Rubin DL, Storey MA, Chute CG, Musen MA. BioPortal: ontologies and integrated data resources at the click of a mouse. Nucleic Acids Res. 2009 Jul 1; 37(Web Server issue):W170-3. Epub 2009 May 29.
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  192. Tao C, Pathak J, Solbrig HR, Chute CG. LexOWL: A Bridge from LexGrid to OWL. International Conference of Biomedical Ontology (ICBO 2009). 2009 Jul:131-4.
  193. Bernstam EV, Hersh WR, Johnson SB, Chute CG, Nguyen H, Sim I, Nahm M, Weiner MG, Miller P, DiLaura RP, Overcash M, Lehmann HP, Eichmann D, Athey BD, Scheuermann RH, Anderson N, Starren J, Harris PA, Smith JW, Barbour E, Silverstein JC, Krusch DA, Nagarajan R, Becich MJ, CTSA Biomedical Informatics Key Function Committee. Synergies and distinctions between computational disciplines in biomedical research: perspective from the Clinical andTranslational Science Award programs. Acad Med. 2009 Jul; 84(7):964-70.
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  194. Jiang G, Pathak J, Chute CG. Formalizing ICD coding rules using Formal Concept Analysis. J Biomed Inform. 2009 Jun; 42(3):504-17. Epub 2009 Feb 21.
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  195. Pathak J, Solbrig HR, Buntrock JD, Johnson TM, Chute CG. LexGrid: a framework for representing, storing, and querying biomedical terminologies from simple to sublime. J Am Med Inform Assoc. 2009 May-Jun; 16: (3)305-15.
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  196. Jiang G, Chute CG. Auditing the semantic completeness of SNOMED CT using formal concept analysis. J Am Med Inform Assoc. 2009 Jan-Feb; 16: (1)89-102.
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  197. Pathak J, Chute CG. Debugging Mappings between Biomedical Ontologies: Preliminary Results from the NCBO BioPortal Mapping Repository. International Conference on Biomedical Ontology (ICBO) Proceedings. 2009:95.
  198. Solbrig HR, Chute CG. Concepts, Modeling and Confusion International Conference on Biomedical Ontology (ICBO) Proceedings. 2009:123.
  199. Savova GK, Coden AR, Sominsky IL, Johnson R, Ogren PV, de Groen PC, Chute CG. Word sense disambiguation across two domains: biomedical literature and clinical notes. J Biomed Inform. 2008 Dec; 41(6):1088-100. Epub 2008 Mar 4
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  200. Freimuth RR, Schauer MW, Lodha P, Govindrao P, Nagarajan R, Chute CG. caBIG compatibility review system: software to support the evaluation of applications using defined interoperability criteria. AMIA Annu Symp Proc. 2008 Nov 06; 197-201.
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  201. Herasevich V, Afessa B, Chute CG, Gajic O. Designing and testing computer based screening engine for severe sepsis/septic shock. AMIA Annu Symp Proc. 2008 Nov 06; 966.
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  202. Pathak J, Jiang G, Dwarkanath SO, Buntrock JD, Chute CG. LexValueSets: an approach for context-driven value sets extraction. AMIA Annu Symp Proc. 2008 Nov 06; 556-60.
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  203. Jiang G, Peterson KJ, Johnson TM, Celik C, Jakob R, Chute CG. Representing the ClaML-based ICD10 in LexGrid terminology model. AMIA Annu Symp Proc. 2008 Nov 06; 992.
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  204. Kim H, Harris MR, Savova GK, Chute CG. The first step toward data reuse: disambiguating concept representation of the locally developed ICU nursing flowsheets. Comput Inform Nurs. 2008 Sep-Oct; 26(5):282-9.
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  205. Pakhomov SV, Jacobsen SJ, Chute CG, Roger VL. Agreement between patient-reported symptoms and their documentation in the medical record. Am J Manag Care. 2008 Aug; 14(8):530-9.
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  206. Jiang G, Chute CG. Comparing the Effects of Two Semantic Terminology Models on Classification of Clinical Notes: A Study of Heart Murmur Findings. Proceedings of KR-MED, Phoenix AZ. 2008 May 31-Jun 2:59-65.
  207. Savova GK, Ogren PV, Duffy PH, Buntrock JD, Chute CG. Mayo clinic NLP system for patient smoking status identification. J Am Med Inform Assoc. 2008 Jan-Feb; 15(1):25-8. Epub 2007 Oct 18.
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  208. Savova G, Kipper-Schuler K, Buntrock J, Chute C. UIMA-based clinical information extraction system. Language Resources and Evaluation Conference (LREC) Annual Conf Proc. 2008:39-42.
  209. Jiang G, Chute CG. Comparing the effects of two semantic terminology models on classification of clinical notes: A study of heart murmur findings. CEUR Workshop Proceedings. 2008; 410:59-65.
  210. Jiang G, Harris MR, Savova GK, Chute CG. Formalizing the International Classification of Functioning, Disability, and Health (ICF) using Formal Concept Analysis (FCA). AMIA Annu Symp Proc. 2007 Oct 11; 994.
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  211. Herasevich V, Yilmaz M, Khan H, Chute CG, Gajic O. Rule base system for identification of patients with specific critical care syndromes: The "sniffer" for acute lung injury. AMIA Annu Symp Proc. 2007 Oct 11; 972.
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  212. Kim H, Harris MR, Savova GK, Speedie SM, Chute CG. Toward near real-time acuity estimation: a feasibility study. Nurs Res. 2007 Jul-Aug; 56(4):288-94.
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  213. Pedersen T, Pakhomov SV, Patwardhan S, Chute CG. Measures of semantic similarity and relatedness in the biomedical domain. J Biomed Inform. 2007 Jun; 40(3):288-99. Epub 2006 Jun 10.
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  214. Pakhomov S, Weston SA, Jacobsen SJ, Chute CG, Meverden R, Roger VL. Electronic medical records for clinical research: application to the identification of heart failure. Am J Manag Care. 2007 Jun; 13(6 Part 1):281-8.
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  215. Pakhomov SV, Buntrock JD, Chute CG. Automating the assignment of diagnosis codes to patient encounters using example-based and machine learning techniques. J Am Med Inform Assoc. 2006 Sep-Oct; 13(5):516-25. Epub 2006 Jun 23.
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  216. Novotny PJ, Sloan JA, Frost M, Harris M, Huntington J, Chute C, Clement-Brown K. A population-based study on the quality of life for cancer patients as reported in a tumor registry follow-up. J Clin Oncol. 2006 Jun 20; 24: (18_suppl)8594.
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  217. Pakhomov SV, Coden A, Chute CG. Developing a corpus of clinical notes manually annotated for part-of-speech. Int J Med Inform. 2006 Jun; 75(6):418-29. Epub 2005 Sep 19.
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  218. Rubin DL, Lewis SE, Mungall CJ, Misra S, Westerfield M, Ashburner M, Sim I, Chute CG, Solbrig H, Storey MA, Smith B, Day-Richter J, Noy NF, Musen MA. National Center for Biomedical Ontology: advancing biomedicine through structured organization of scientific knowledge. OMICS. 2006 Summer; 10(2):185-98.
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  219. Kim H, Harris MR, Savova G, Chute CG. Content coverage of SNOMED-CT toward the ICU nursing flowsheets and the acuity indicators. Stud Health Technol Inform. 2006; 122:722-6.
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  220. Ogren PV, Savova G, Buntrock JD, Chute CG. Building and evaluating annotated corpora for medical NLP systems. AMIA Annu Symp Proc. 2006; 1050.
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  221. Pakhomov S, Chute CG. A hybrid approach to determining modification of clinical diagnoses. AMIA Annu Symp Proc. 2006; 609-13.
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  222. Joshi M, Pakhomov S, Pedersen T, Chute CG. A comparative study of supervised learning as applied to acronym expansion in clinical reports. AMIA Annu Symp Proc. 2006; 399-403.
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  223. Pakhomov SVS, Buntrock JD, Chute CG. Improving the efficiency of manual classification of clinical diagnoses with example-based and machine learning techniques. Journal of American Medical Informatics Association. 2006; 13:516-525.
  224. Coden AR, Pakhomov SV, Ando RK, Duffy PH, Chute CG. Domain-specific language models and lexicons for tagging. J Biomed Inform. 2005 Dec; 38(6):422-30.
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  225. Pakhomov SV, Buntrock J, Chute CG. Prospective recruitment of patients with congestive heart failure using an ad-hoc binary classifier. J Biomed Inform. 2005 Apr; 38(2):145-53.
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  226. Savova G, Harris M, Pakhomov S, Chute CG. Frame semantics and the domain of functioning, disability and health. AMIA Annu Symp Proc. 2005; 1106.
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  227. Supekar K, Chute CG, Solbrig H. Representing lexical components of medical terminologies in OWL. AMIA . Annual Symposium Proceedings/AMIA Symposium. 2005; 719-23.
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  228. Pakhomov S, Pedersen T, Chute CG. Abbreviation and acronym disambiguation in clinical discourse. AMIA Annu Symp Proc. 2005; 589-93.
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  229. Thomson McInnes BA, Pakhomov SV, Pedersen T, Chute CG. Incorporating bigram statistics to spelling correction tools. Medinfo. 2004; 2004(CD):1882.
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  230. Savova GK, Becker D, Harris M, Chute CG. Combining rule-based methods and latent semantic analysis for ontology structure construction. Medinfo. 2004; 2004(CD):1848.
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  231. Solbrig HR, Chute CG. Terminology access methods leveraging LDAP resources. Medinfo. 2004; 11(Pt 1):545-9.
  232. Ruggieri AP, Pakhomov SV, Chute CG. A corpus driven approach applying the "frame semantic" method for modeling functional status terminology. Medinfo. 2004; 11(Pt 1):434-8.
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  233. Pakhomov SV, Buntrock JD, Chute CG. Using compound codes for automatic classification of clinical diagnoses. Medinfo. 2004; 11(Pt 1):411-5.
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  234. Tu SW, Musen MA, Shankar R, Campbell J, Hrabak K, McClay J, Huff SM, McClure R, Parker C, Rocha R, Abarbanel R, Beard N, Glasgow J, Mansfield G, Ram P, Ye Q, Mays E, Weida T, Chute CG, McDonald K, Mohr D, Nyman MA, Scheitel S, Solbrig H, Zill DA, Goldstein MK. Modeling guidelines for integration into clinical workflow. Medinfo. 2004; 2004:174-8.
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  235. Freimuth RR, Wiepert M, Chute CG, Wieben ED, Weinshilboum RM. Human cytosolic sulfotransferase database mining: identification of seven novel genes and pseudogenes. Pharmacogenomics J. 2004; 4(1):54-65.
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  236. Harris MR, Savova GK, Johnson TM, Chute CG. A term extraction tool for expanding content in the domain of functioning, disability, and health: proof of concept. J Biomed Inform. 2003 Aug-Oct; 36(4-5):250-9.
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  237. Harris MR, Ruggieri AP, Chute CG. From clinical records to regulatory reporting: formal terminologies as foundation. Health Care Financ Rev. 2003 Spring; 24(3):103-20.
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  238. Solbrig HR, Armbrust DC, Chute CG. The Open Terminology Services (OTS) project. AMIA Annu Symp Proc. 2003; 1011.
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  239. Savova GK, Harris M, Johnson T, Pakhomov SV, Chute CG. A data-driven approach for extracting "the most specific term" for ontology development. AMIA Annu Symp Proc. 2003; 579-83.
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  240. Harris M, Kim H, Rhudy L, Savova G, Chute C. Testing the generalizability of the ISO model for nursing diagnoses. AMIA Annu Symp Proc. 2003; 274-8.
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  241. Chute CG, Carter JS, Tuttle MS, Haber M, Brown SH. Integrating pharmacokinetics knowledge into a drug ontology: as an extension to support pharmacogenomics. AMIA Annu Symp Proc. 2003; 170-4.
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  242. Chute CG, Koo D. Public health, data standards, and vocabulary: crucial infrastructure for reliable public health surveillance. Journal of Public Health Management & Practice. 2002 May; 8(3):11-7.
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  243. Harris MR, Frost M, Clement-Brown KA, Novotny PJ, Chute CG. Quality of life of cancer patients as reported in a tumor registry follow-up. Clin Ther. 2002; 24(Suppl B):43-4.
  244. Chute CG. The horizontal and vertical nature of patient phenotype retrieval: new directions for clinical text processing. Proc AMIA Symp. 2002; 165-9.
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  245. Buntrock JD, Chute CG. An evaluation of unmediated versus mediated retrieval services. Proc AMIA Symp. 2002; 81-5.
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  246. Pakhomov SV, Ruggieri A, Chute CG. Maximum entropy modeling for mining patient medication status from free text. Proc AMIA Symp. 2002; 587-91.
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  247. Chute CG. Drugs, codes, standards, and other incompatible things in the dark. MD Comput. 2001 Jan-Feb; 18(1):45-6.
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  248. Gwaltney K, Chute C, Hageman D, Kibbe W, McCormick K, Reeves D, Wright L. An assessment of cancer clinical trials vocabulary and IT infrastructure in the US. J Am Med Inform Assoc. 2001(Suppl S):224-8.
  249. Elkin PL, Brown SH, Chute CG. Guideline for health informatics: controlled health vocabularies--vocabulary structure and high-level indicators. Medinfo. 2001; 10(Pt 1):191-5.
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  250. Ruggieri AP, Elkin PL, Solbrig H, Chute CG. Expression of a domain ontology model in unified modeling language for the World Health Organization International classification of impairment, disability, and handicap, version 2. Proc AMIA Symp. 2001; 573-7.
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  251. Ball MJ, Silva JS, Peterson H, Chute CG. The patient record in cancer care. Stud Health Technol Inform. 2001; 84:1526.
  252. Yasnoff WA, Chute CG, Scherrer JR, Pittet D. Charting the future of public health informatics. Stud Health Technol Inform. 2001; 84:1519.
  253. Chute CG. Nomenclatures, classifications and case-mix: From patient description to abstraction. Stud Health Technol Inform. 2001; 86:1-7.
  254. Elkin PL, Brown SH, Chute CG. Guideline for health informatics: controlled health vocabularies--vocabulary structure and high-level indicators. Stud Health Technol Inform. 2001; 84(Pt 1):191-5.
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  255. Harris MR, Graves JR, Solbrig HR, Elkin PL, Chute CG. Embedded structures and representation of nursing knowledge. J Am Med Inform Assoc. 2000 Nov-Dec; 7(6):539-49.
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  256. Chute CG. Public health, clinical data, and common cause: information standards as mediating foci. MD Comput. 2000 Sep-Oct; 17(5):15-6.
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  257. Chute CG. Clinical classification and terminology: some history and current observations. J Am Med Inform Assoc. 2000 May-Jun; 7(3):298-303.
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  258. Chute CG. . . . and data for all: the NCI initiative on clinical infrastructure standards. MD Comput. 2000 Mar-Apr; 17(2):19-21.
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  259. Elkin PL, Chute CG. Guideline for the Achievement of Comparable Data When Evaluating Controlled Health Vocabularies. Proceedings of the INFOcus Symposium. 2000.
  260. Elkin PL, Ruggieri A, Bergstrom L, Bauer BA, Lee M, Ogren PV, Chute CG. A randomized controlled trial of concept based indexing of Web page content. Proceedings / AMIA . Annual Symposium. 2000:220-4.
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  261. Harris MR, Graves JR, Herrick LM, Elkin PL, Chute CG. The content coverage and organizational structure of terminologies: the example of postoperative pain. Proc AMIA Symp. 2000; 335-9.
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  262. Ruggieri AP, Elkin P, Chute CG. Representation by standard terminologies of health status concepts contained in two health status assessment instruments used in rheumatic disease management. Proceedings / AMIA . Annual Symposium. 2000:734-8.
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  263. Solbrig HR, Elkin PL, Ogren PV, Chute CG. A formal approach to integrating synonyms with a reference terminology. Proc AMIA Symp. 2000; 814-8.
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  264. Wagner JL, Alberts SR, Sloan JA, Cha S, Killian J, O'Connell MJ, Van Grevenhof P, Lindman J, Chute CG. Incremental costs of enrolling cancer patients in clinical trials: a population-based study. J Natl Cancer Inst. 1999 May 19; 91(10):847-53.
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  265. Chute CG. ISO TC 215: what the health world needs now. MD Comput. 1999 May-Jun; 16(3):21-2.
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  266. Chute CG. Standards move to center stage. MD Comput. 1999 Jan-Feb; 16(1):29-32.
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  267. Chute CG, Solbrig HR, Elkin PL. Terminology services as software components: an architecture and preliminary efforts. Proceedings, IMIA Working Group 6 Conference. 1999.
  268. Elkin PL, Harris MR, Ogren PV, Buntrock JD, Brown SH, Solbrig HR, Chute CG. Semantic augmentation of description logic based terminologies. Proceedings, IMIA Working Group 6 Conference. 1999.
  269. McDonald FS, Chute CG, Ogren PV, Wahner-Roedler D, Elkin PL. A large-scale evaluation of terminology integration characteristics. Proc AMIA Symp. 1999; 864-7.
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  270. McKnight LK, Elkin PL, Ogren PV, Chute CG. Barriers to the clinical implementation of compositionality. Proc AMIA Symp. 1999; 320-4.
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  271. Elkin PL, Bailey KR, Ogren PV, Bauer BA, Chute CG. A randomized double-blind controlled trial of automated term dissection. Proc AMIA Symp. 1999; 62-6.
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  272. Dunne D, Chute CG. Detailed content and terminological properties of DSM-IV. Proc AMIA Symp. 1999; 57-61.
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  273. Chute CG, Elkin PL, Sherertz DD, Tuttle MS. Desiderata for a clinical terminology server. Proc AMIA Symp. 1999; 42-6.
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  274. Chute CG, Cohn SP, Campbell JR. A framework for comprehensive health terminology systems in the United States: development guidelines, criteria for selection, and public policy implications. ANSI Healthcare Informatics Standards Board Vocabulary Working Group and the Computer-Based Patient Records Institute Working Group on Codes and Structures. J Am Med Inform Assoc. 1998 Nov-Dec; 5(6):503-10.
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  275. Tuttle MS, Olson NE, Keck KD, Cole WG, Erlbaum MS, Sherertz DD, Chute CG, Elkin PL, Atkin GE, Kaihoi BH, Safran C, Rind D, Law V. Metaphrase: an aid to the clinical conceptualization and formalization of patient problems in healthcare enterprises. Methods Inf Med. 1998 Nov; 37(4-5):373-83.
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  276. Campbell KE, Cohn SP, Chute CG, Shortliffe EH, Rennels G. Scalable methodologies for distributed development of logic-based convergent medical terminology. Methods Inf Med. 1998 Nov; 37(4-5):426-39.
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  277. Xia Z, Jacobsen SJ, Bergstralh EJ, Chute CG, Katusic SK, Lieber MM. Secular changes in radical prostatectomy utilization rates in Olmsted County, Minnesota 1980 to 1995. J Urol. 1998 Mar; 159(3):904-8.
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  278. Gibbons PS, Baker SA, Carpenter PC, Chute CG, Claus PL, Emerson P, Gleser MA, Mohr DN, Randell CL. Adding value to care delivery: approaches to episodes of care. HIMSS '98 Imagine the future: proceedings of the 1998 Annual HIMSS Conference, Feb 22-26, 1998, Orlando, Florida. 1998 Feb 22-26; 2: 174-84.
  279. Elkin PL, Tuttle MS, Keck K, Atkin GE, Chute CG. A Java-based Tool for entry of a Medical problem List, Which Accesses a Remote Large Scale Enterprise Vocabulary Server. JAMIA Symp Suppl;. 1998; 0: 1120.
  280. Tuttle MS, Chute CG, Safran C, Abelson DJ. Formalizing clinical problem lists. Proceedings of Healthcare Information Systems Society. 1998; 2:109-15.
  281. Liu Q, Buntrock JD, Crowson DL, Tuttle MS, Elkin PL, Chute CG. A java-based interface for the medical research project classification using metaphrase JAMIA Symposium. 1998; Supplement:1037.
  282. Chute CG, Elkin PL, Fenton SH, Atkin GE. A clinical terminology in the post modern era: pragmatic problem list development. Proc AMIA Symp. 1998; 795-9.
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  283. Elkin PL, Bailey KR, Chute CG. A randomized controlled trial of automated term composition. Proc AMIA Symp. 1998; 765-9.
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  284. Chute CG. The Copernican era of healthcare terminology: a re-centering of health information systems. Proc AMIA Symp. 1998; 68-73.
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  285. Elkin PL, Tuttle M, Keck K, Campbell K, Atkin G, Chute CG. The role of compositionality in standardized problem list generation. Stud Health Technol Inform. 1998; 52 Pt 1:660-4.
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  286. Campbell JR, Carpenter P, Sneiderman C, Cohn S, Chute CG, Warren J. Phase II evaluation of clinical coding schemes: completeness, taxonomy, mapping, definitions, and clarity. CPRI Work Group on Codes and Structures. J Am Med Inform Assoc. 1997 May-Jun; 4(3):238-51.
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  287. Cohn SP, Chute CG. Clinical terminologies and computer-based patient records. J AHIMA. 1997 Feb; 68(2):41-3.
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  288. Chute CG, Elkin PL. A clinically derived terminology: qualification to reduction. Proc AMIA Annu Fall Symp. 1997; 570-4.
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  289. Elkin PL, Mohr DN, Tuttle MS, Cole WG, Atkin GE, Keck K, Fisk TB, Kaihoi BH, Lee KE, Higgins MC, Suermondt HJ, Olson N, Claus PL, Carpenter PC, Chute CG. Standardized problem list generation, utilizing the Mayo canonical vocabulary embedded within the Unified Medical Language System. Proc AMIA Annu Fall Symp. 1997; 500-4.
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  290. Claus PL, Carpenter PC, Chute CG, Mohr DN, Gibbons PS. Clinical care management and workflow by episodes. Proc AMIA Annu Fall Symp. 1997; 91-5.
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  291. Chute CG, Cohn SP, Campbell KE, Oliver DE, Campbell JR. The content coverage of clinical classifications. For The Computer-Based Patient Record Institute's Work Group on Codes & Structures. J Am Med Inform Assoc. 1996 May-Jun; 3: (3)224-33.
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  292. Chute CG. Modeling the Medical Record at the Intersection of Information and Terminology L Campbell, CP Waegemann (Eds.). Conference Summary: Medical Records and Modeling. ANSI HISPP and CEN TC 251 Working Group 1. Rockville, MD: AHCPR, Publication no. 96-NO12,. 1996; 0: 0.
  293. Campbell KE, Cohn SP, Chute CG, Rennels G, Shortliffe EH. Galapagos: computer-based support for evolution of a convergent medical terminology. Proc AMIA Annu Fall Symp. 1996; 269-73.
  294. Jacobsen SJ, Katusic SK, Bergstralh EJ, Oesterling JE, Ohrt D, Klee GG, Chute CG, Lieber MM. Incidence of prostate cancer diagnosis in the eras before and after serum prostate-specific antigen testing. JAMA. 1995 Nov 8; 274: (18)1445-9.
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  295. Roberts RO, Rhodes T, Panser LA, Girman CJ, Chute CG, Guess HA, Oesterling JE, Lieber MM, Jacobsen SJ. Association between family history of benign prostatic hyperplasia and urinary symptoms: results of a population-based study. Am J Epidemiol. 1995 Nov 1; 142(9):965-73.
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  296. Panser LA, Rhodes T, Girman CJ, Guess HA, Chute CG, Oesterling JE, Lieber MM, Jacobsen SJ. Sexual function of men ages 40 to 79 years: the Olmsted County Study of Urinary Symptoms and Health Status Among Men. J Am Geriatr Soc. 1995 Oct; 43(10):1107-11.
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  297. Girman CJ, Jacobsen SJ, Guess HA, Oesterling JE, Chute CG, Panser LA, Lieber MM. Natural history of prostatism: relationship among symptoms, prostate volume and peak urinary flow rate. J Urol. 1995 May; 153(5):1510-5.
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  298. Safran C, Chute CG. Exploration and exploitation of clinical databases. Int J Biomed Comput. 1995 Apr; 39(1):151-6.
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  299. Guess HA, Jacobsen SJ, Girman CJ, Oesterling JE, Chute CG, Panser LA, Lieber MM. The role of community-based longitudinal studies in evaluating treatment effects. Example: benign prostatic hyperplasia. Med Care. 1995 Apr; 33(4 Suppl):AS26-35.
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  300. Chute CG, Yang Y. An overview of statistical methods for the classification and retrieval of patient events. Methods Inf Med. 1995 Mar; 34: (1-2)104-10.
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  301. Jacobsen SJ, Girman CJ, Guess HA, Panser LA, Chute CG, Oesterling JE, Lieber MM. Do prostate size and urinary flow rates predict health care-seeking behavior for urinary symptoms in men? Urology. 1995 Jan; 45 (1):64-9
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  302. Chute CG. Moving toward international standards in primary care informatics. Conference Summary Report Moving Toward International Standards in Primary Care Clinical Vocabulary Silver Springs MD AHCPR Pub -0069 (Keynote address, Moving Toward International Standards in Primary Care Informatics: Clinical Vocabulary, New Orleans, November 1-2, ). 1995; Informatics: (No. 96)9-12.
  303. Chute CG, Crowson DL, Buntrock JD. Medical information retrieval and WWW browsers at Mayo. Proc Annu Symp Comput Appl Med Care. 1995; 903-7.
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  304. Yang Y, Chute CG. Sampling strategies in a statistical approach to clinical classification. Proc Annu Symp Comput Appl Med Care. 1995; 32-6.
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  305. Giovannucci E, Rimm EB, Chute CG, Kawachi I, Colditz GA, Stampfer MJ, Willett WC. Obesity and benign prostatic hyperplasia. Am J Epidemiol. 1994 Dec 1; 140(11):989-1002.
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  306. Panser LA, Chute CG, Guess HA, Larsonkeller JJ, Girman CJ, Oesterling JE, Lieber MM, Jacobsen SJ. The natural history of prostatism: the effects of non-response bias. Int J Epidemiol. 1994 Dec; 23(6):1198-205.
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  307. Warner MA, Martin JT, Schroeder DR, Offord KP, Chute CG. Lower-extremity motor neuropathy associated with surgery performed on patients in a lithotomy position. Anesthesiology. 1994 Jul; 81(1):6-12.
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  308. Panser LA, Chute CG, Girman CJ, Guess HA, Oesterling JE, Lieber MM, Jacobsen SJ. Effect of several recruitment strategies on response rates at baseline in a prospective cohort investigation. The Olmsted County Study of Urinary Symptoms and Health Status among Men. Ann Epidemiol. 1994 Jul; 4 (4):321-6
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  309. Yang YM, Chute CG. An example-based mapping method for text categorization and retrieval. ACM Transactions on Information Systems. 1994 Jul; 12:252-277.
  310. Roberts RO, Jacobsen SJ, Rhodes T, Guess HA, Girman CJ, Panser LA, Chute CG, Oesterling JE, Lieber MM. Cigarette smoking and prostatism: a biphasic association? Urology. 1994 Jun; 43 (6):797-801
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  311. Roberts RO, Rhodes T, Panser LA, Girman CJ, Chute CG, Oesterling JE, Lieber MM, Jacobsen SJ. Natural history of prostatism: worry and embarrassment from urinary symptoms and health care-seeking behavior. Urology. 1994 May; 43(5):621-8.
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  312. Corder EH, Chute CG, Guess HA, Beard CM, O'Fallon WM, Lieber MM. Prostate cancer in Rochester, Minnesota (USA), from 1935 to 1989: increases in incidence related to more complete ascertainment. Cancer Causes Control. 1994 May; 5(3):207-14.
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  313. Chute CG, Cesnik B, van Bemmel JH. Medical data and knowledge management by integrated medical workstations: summary and recommendations. Int J Biomed Comput. 1994 Jan; 34(1-4):175-83.
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  314. Oesterling JE, Girman CJ, Panser LA, Chute CG, Barrett DM, Guess HA, Lieber MM. Correlation between urinary flow rate, voided volume, and patient age in a community-based population. Prog Clin Biol Res. 1994; 386:125-139.
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  315. Chute CG, Yang Y, Buntrock J. An evaluation of computer assisted clinical classification algorithms. Proc Annu Symp Comput Appl Med Care. 1994; 162-6.
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  316. Yang Y, Chute CG. An application of Expert Network to clinical classification and MEDLINE indexing. Proc Annu Symp Comput Appl Med Care. 1994; 157-61.
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  317. Jacobsen SJ, Girman CJ, Guess HA, Panser LA, Chute CG, Oesterling JE, Lieber MM. Natural history of prostatism: factors associated with discordance between frequency and bother of urinary symptoms. Urology. 1993 Dec; 42 (6):663-71
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  318. Guess HA, Chute CG, Garraway WM, Girman CJ, Panser LA, Lee RJ, Jacobsen SJ, McKelvie GB, Oesterling JE, Lieber MM. Similar levels of urological symptoms have similar impact on Scottish and American men--although Scots report less symptoms. J Urol. 1993 Nov; 150(5 Pt 2):1701-5.
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  319. Warner MA, Shields SE, Chute CG. Major morbidity and mortality within 1 month of ambulatory surgery and anesthesia. JAMA. 1993 Sep 22-29; 270: (12)1437-41.
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  320. Girman CJ, Panser LA, Chute CG, Oesterling JE, Barrett DM, Chen CC, Arrighi HM, Guess HA, Lieber MM. Natural history of prostatism: urinary flow rates in a community-based study. J Urol. 1993 Sep; 150(3):887-92.
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  321. Oesterling JE, Jacobsen SJ, Chute CG, Guess HA, Girman CJ, Panser LA, Lieber MM. Serum prostate-specific antigen in a community-based population of healthy men. Establishment of age-specific reference ranges. JAMA. 1993 Aug 18; 270: (7)860-4.
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  322. Chute CG, Panser LA, Girman CJ, Oesterling JE, Guess HA, Jacobsen SJ, Lieber MM. The prevalence of prostatism: a population-based survey of urinary symptoms. J Urol. 1993 Jul; 150 (1):85-9
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  323. Jacobsen SJ, Guess HA, Panser L, Girman CJ, Chute CG, Oesterling JE, Lieber MM. A population-based study of health care-seeking behavior for treatment of urinary symptoms. The Olmsted County Study of Urinary Symptoms and Health Status Among Men. Arch Fam Med. 1993 Jul; 2(7):729-35.
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  324. Dennis DT, Smith RP, Welch JJ, Chute CG, Anderson B, Herndon JL, von Reyn CF. Endemic giardiasis in New Hampshire: a case-control study of environmental risks. J Infect Dis. 1993 Jun; 167(6):1391-5.
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  325. Amadio PC, Bartleson JD, Carpenter PC, Chute CG, Gibbons PS. Redesigning patient care. Journal of the Society for Health Sciences. 1993; 4:65-83.
  326. Yang Y, Chute CG. An application of least squares fit mapping to text information retrieval. Proc 16th Ann Int ACM SIGIR Conference on Research and Development in Information Retrieval ( 281-9. 1993; Special SIGIR Forum: 0.
  327. Yang Y, Chute CG. Words or concepts: the features of indexing units and their optimal use in information retrieval. Proc Annu Symp Comput Appl Med Care. 1993; 685-9.
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  328. Carpenter PC, Chute CG. The Universal Patient Identifier: a discussion and proposal. Proc Annu Symp Comput Appl Med Care. 1993; 49-53.
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  329. Chute CG. Clinical data retrieval and analysis. I've seen a case like that before. Ann N Y Acad Sci. 1992 Dec 17; (670):133-40.
  330. Epstein RS, Deverka PA, Chute CG, Panser L, Oesterling JE, Lieber MM, Schwartz S, Patrick D. Validation of a new quality of life questionnaire for benign prostatic hyperplasia. J Clin Epidemiol. 1992 Dec; 45(12):1431-45.
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  331. Chute CG. The classification of medical events using Latent Semantic Analysis. BH Kwasnik, R Fidel (eds). Advances in Classification Research--Vol II Proceedings of the 2nd ASIS SIG/CR Workshop on Classification Research Medford Learned Information Inc. 1992; NJ:45-51.
  332. Chute CG, Atkin GE, Ihrke DM. An empirical evaluation of concept capture by clinical classifications. Proceedings of MEDINFO 92. 1992; II:1469-74.
  333. Evans DA, Chute CG, Handerson SK, Yang Y, Monarch IA, Hersh WR. Latent Semantics as a basis for managing variation in medical terminologies Proceedings of MEDINFO 92. 1992; II:1462-68.
  334. Yang Y, Chute CG. A numerical solution for text information retrieval and its application in patient data classification. Technical Report Series, Report #50, Section of Biostatistics, Mayo Clinic, Rochester, Minnesota. 1992.
  335. Yang Y, Chute CG. A linear least squares fit mapping method for information retrieval from natural language texts. Proceedings of the International Conference on Computational Linguistics (COLING 92). 1992; II: 447-53.
  336. Beeler GW Jr, Gibbons PS, Chute CG. Development of a clinical data architecture. Proc Annu Symp Comput Appl Med Care. 1992; 244-8.
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  337. Chute CG, Yang Y. An evaluation of concept based latent semantic indexing for clinical information retrieval. Proc Annu Symp Comput Appl Med Care. 1992; 639-43.
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  338. Yang Y, Chute CG. An application of least squares fit mapping to clinical classification. Proc Annu Symp Comput Appl Med Care. 1992; 460-4.
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  339. Yang YM, Chute CG. Hierarchical distribution analysis for computer-assisted classifications of patient records. Med Decis Making. 1991 Oct-Dec; 11(4 Suppl):S94-8.
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  340. Chute CG, Chuang TY, Bergstralh EJ, Su WP. The subsequent risk of internal cancer with Bowen's disease. A population-based study. JAMA. 1991 Aug 14; 266: (6)816-9.
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  341. Stephenson WP, Chute CG, Guess HA, Schwartz S, Lieber M. Incidence and outcome of surgery for benign prostatic hyperplasia among residents of Rochester, Minnesota: 1980-87. (A population-based study). Urology. 1991 Jul; 38(Suppl):32-42.
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  342. Chute CG, Stephenson WP, Guess HA, Lieber M. Benign prostatic hyperplasia: a population-based study. Eur Urol. 1991; 20(Suppl 1):11-7.
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  343. Chute CG, Willett WC, Colditz GA, Stampfer MJ, Rosner B, Speizer FE. A prospective study of reproductive history and exogenous estrogens on the risk of colorectal cancer in women. Epidemiology. 1991; 2(3):201-7.
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  344. Epstein RS, Deverka PA, Chute CG, Lieber MM, Oesterling JE, Panser LA, Schwartz S, Guess HA, Patrick D. Urinary symptoms and quality of life questions indicative of obstructive benign prostatic hyperplasia: Results of a pilot study. Urology 38 (. 1991; Suppl 1): 20-6.
  345. Chute CG, Willett WC, Colditz GA, Stampfer MJ, Baron JA, Rosner B, Speizer FE. A prospective study of body mass, height, and smoking on the risk of colorectal cancer in women. Cancer Causes and Controls. 1991; 2(2):117-24.
  346. Tuttle MS, Sherertz DD, Erlbaum MS, Sperzel WD, Fuller LF, Olson NE, Nelson SJ, Cimino JJ, Chute CG. Adding your terms and relationships to the UMLS Proceedings of the 15th Annual Symposium on Computer Applications in Medical Care. 1991; 1991:219-23.
  347. Chute CG. Classification and retrieval of patient records using natural language: An experimental application of latent semantic analysis Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society. 1991; 13(3):1162-3.
  348. Van Grevenhof P, Chute CG, Ballard DJ. A common and clonable environment to support research using patient data. Proc Annu Symp Comput Appl Med Care. 1991; 358-62.
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  349. Chute CG, Yang Y, Evans DA. Latent Semantic Indexing of medical diagnoses using UMLS semantic structures. Proc Annu Symp Comput Appl Med Care. 1991; 185-9.
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  350. Yang Y, Chute CG. A schematic analysis of the Unified Medical Language System. Proc Annu Symp Comput Appl Med Care. 1991; 204-8.
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  351. Rimm EB, Stampfer MJ, Colditz GA, Chute CG, Litin LB, Willett WC. Validity of self-reported waist and hip circumferences in men and women. Epidemiology. 1990 Nov; 1(6):466-73.
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  352. Hunter DJ, Morris JS, Chute CG, Kushner E, Colditz GA, Stampfer MJ, Speizer FE, Willett WC. Predictors of selenium concentration in human toenails. Am J Epidemiol. 1990 Jul; 132(1):114-22.
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  353. Chuang TY, Popescu A, Su WPD, Chute CG. A population-based incidence study in Rochester, Minnesota. J Am Acad Dermatol. 1990 Mar; 22:413-417.
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  354. Chuang TY, Popescu NA, Su WP, Chute CG. Squamous cell carcinoma. A population-based incidence study in Rochester, Minn. Arch Dermatol. 1990 Feb; 126(2):185-8.
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  355. Chute CG, Yang Y, Tuttle MS, Sherertz DD, Olson NE, Erlbaum MS. A preliminary evaluation of the UMLS Metathesaurus for patient record classification Proceedings of the 14th Annual Symposium on Computer Applications in Medical Care (SCAMC). 1990:161-5.
  356. Hankinson SE, London SJ, Chute CG, Barbieri RL, Jones L, Kaplan LA, Sacks FM, Stampfer MJ. Effect of transport conditions on the stability of biochemical markers in blood. Clin Chem. 1989 Dec; 35(12):2313-6.
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  357. Talley NJ, Chute CG, Larson DE, Epstein R, Lydick EG, Melton LJ 3rd. Risk for colorectal adenocarcinoma in pernicious anemia. A population-based cohort study. Ann Intern Med. 1989 Nov 1; 111(9):738-42.
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  358. Kiel DP, Baron JA, Plymate SR, Chute CG. Sex hormones and lipoproteins in men. Am J Med. 1989 Jul; 87(1):35-9.
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  359. Chute CG, Côté RA. Computerized natural medical language pro-cessing for knowledge representation: Overview of Working Group Conference, Geneva, September 1988. B. Barber, D. Cao, D. Qin, G. Wagner (eds.) Proceeding on the Sixth Conference on Medical Informatics (MEDINFO '89) North-Holland, Amsterdam. 1989:878-81.
  360. Beeler GW, Chute CG. A brief history and future directions of medical informatics at Mayo Clinic. B. Barber, Cao, D. Qin, G. Wagner (eds.) Proceedings of the Sixth Conference on Medical Informatics (MEDINFO'89) Supplement North-Holland,. 1989; Amsterdam.
  361. Massell BF, Chute CG, Walker AM, Kurland GS. Penicillin and the marked decrease in morbidity and mortality from rheumatic fever in the United States. N Engl J Med. 1988 Feb 4; 318(5):280-6.
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  362. Greenberg E, Chute CG, Stukel T, Baron J, Freeman D, Yates J, Korson R. Social and economic factors in choice of lung cancer treatment--a population-based study in two rural states. N Engl J Med. 1988; 318:612-617.
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  363. Robins JM, Pambrun M, Chute CG, Blevins D. Estimating the effect of formaldehyde exposure on lung cancer and non-malignant respiratory disease (MNRD) mortality using a new method to control for the healthy worker survivor effect. Am J Publ Hlth. 1988:S114-5.
  364. Chute CG, Baron JA, Plymate SR, Kiel DP, Pavia AT, Lozner EC, O'Keefe T, MacDonald GJ. Sex hormones and coronary artery disease. Am J Med. 1987 Nov; 83(5):853-9.
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  365. Chute CG, Smith R, Baron J. Risk factors for endemic giardiasis. Am J Publ Hlth. 1987; 77:585-7.
  366. Chute CG, Greenberg E, Baron J, Korson R, Baker J, Yates J. Presenting conditions of 1539 population lung cancer patients by cell type and stage in New Hampshire and Vermont. Cancer. 1985; 56:2107-2111.
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