Publications

  1. Wang X, Krambeck AE, Williams JC Jr, Tang X, Rule AD, Zhao F, Bergstralh E, Haskic Z, Edeh S, Holmes DR 3rd, Hernandez LP, Lieske JC. Distinguishing Characteristics of Idiopathic Calcium Oxalate Kidney Stone Formers with Low Amounts of Randall's Plaque. Clin J Am Soc Nephrol. 2014 Oct 7; 9(10):1757-63. Epub 2014 Aug 04.
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  2. Bharucha AE, Karwoski RA, Fidler J, Holmes DR 3rd, Robb RA, Riederer SJ, Zinsmeister AR. Comparison of manual and semiautomated techniques for analyzing gastric volumes with MRI in humans. Am J Physiol Gastrointest Liver Physiol. 2014 Sep 1; 307(5):G582-7. Epub 2014 Jul 10.
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  3. Holmes DR 3rd, Davis BJ, Goulet CC, Wilson TM, Mynderse LA, Furutani KM, Camp JJ, Robb RA. Shape analysis of the prostate: establishing imaging specifications for the design of a transurethral imaging device for prostate brachytherapy guidance. Brachytherapy. 2014 Sep-Oct; 13(5):465-70. Epub 2014 Jun 21.
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  4. Sulc V, Stykel S, Hanson DP, Brinkmann BH, Jones DT, Holmes DR 3rd, Robb RA, Senjem ML, Mullan BP, Watson RE Jr, Horinek D, Cascino GD, Wong-Kisiel LC, Britton JW, So EL, Worrell GA. Statistical SPECT processing in MRI-negative epilepsy surgery. Neurology. 2014 Mar 18; 82(11):932-9. Epub 2014 Feb 14.
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  5. Rettmann ME, Holmes DR 3rd, Kwartowitz DM, Gunawan M, Johnson SB, Camp JJ, Cameron BM, Dalegrave C, Kolasa MW, Packer DL, Robb RA. Quantitative modeling of the accuracy in registering preoperative patient-specific anatomic models into left atrial cardiac ablation procedures. Med Phys. 2014 Feb; 41(2):021909.
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  6. Sun D, Rettmann ME, Holmes Iii DR, Linte C, Cameron B, Liu J, Packer D, Robb RA. Anatomic surface reconstruction from sampled point cloud data and prior models. Stud Health Technol Inform. 2014; 196:387-93.
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  7. Sun D, Rettmann ME, Holmes DR III, Linte CA, Packer D, Robb RA. Updating a preoperative surface model with information from real-time tracked 2D ultrasound using a Poisson surface reconstruction algorithm. Progress in Biomedical Optics and Imaging - Proceedings of SPIE. 2014; 9036:90361T.
  8. Linte CA, Camp JJ, Augustine KE, Huddleston PM, Robb RA, Holmes DR III. Virtual estimates of fastening strength for pedicle screw implantation procedures. Progress in Biomedical Optics and Imaging - Proceedings of SPIE. 2014; 9036:903617.
  9. Rettmann ME, Holmes DR III, Linte CA, Packer DL, Robb RA. Toward standardized mapping for left atrial analysis and cardiac ablation guidance. Progress in Biomedical Optics and Imaging - Proceedings of SPIE. 2014; 9036:90361K.
  10. Camp JJ, Hanson DP, Holmes DR, Kemp BJ, Senjem ML, Murray ME, Dickson DW, Parisi JE, Petersen RC, Lowe VJ, Robb RA. Quantitative characterization of brain beta-amyloid using a joint PiB/FDG PET image histogram. Progress in Biomedical Optics and Imaging - Proceedings of SPIE. 2014; 9035:90352A.
  11. Techentin R, Foti D, Li P, Daniel E, Gilbert B, Holmes D, Al-Saffar S. Development of a semi-synthetic dataset as a testbed for big-data semantic analytics. Proceedings - 2014 IEEE International Conference on Semantic Computing, ICSC 2014. 2014; (2):252-3.
  12. Pallanch JF, Yu L, Delone D, Robb R, Holmes DR 3rd, Camp J, Edwards P, McCollough CH, Ponikau J, Dearking AC, Lane J, Primak A, Shinkle A, Hagan J, Frigas E, Ocel JJ, Tombers N, Siwani R, Orme NM, Reed KB, Jerath N, Dhillon R, Kita H. Three-dimensional volumetric computed tomographic scoring as an objective outcome measure for chronic rhinosinusitis: clinical correlations and comparison to Lund-Mackay scoring. Int Forum Allergy Rhinol. 2013 Dec; 3(12):963-72. Epub 2013 Sep 17.
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  13. Krambeck AE, Lieske JC, Li X, Bergstralh EJ, Rule AD, Holmes D 3rd, McCollough CM, Vrtiska TJ. Current computed tomography techniques can detect duct of Bellini plugging but not Randall's plaques. Urology. 2013 Aug; 82(2):301-6. Epub 2013 Jun 20.
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  14. Linte CA, Davenport KP, Cleary K, Peters C, Vosburgh KG, Navab N, Edwards PE, Jannin P, Peters TM, Holmes DR 3rd, Robb RA. On mixed reality environments for minimally invasive therapy guidance: systems architecture, successes and challenges in their implementation from laboratory to clinic. Comput Med Imaging Graph. 2013 Mar; 37(2):83-97. Epub 2013 Feb 08.
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  15. Linte CA, Camp JJ, Holmes DR III, Rettmann ME, Packer DL, Robb RA. Toward modeling of radio-frequency ablation lesions for image-guided left atrial fibrillation therapy: model formation and preliminary evaluations. Medicine Meets Virtual Reality. 2013 Feb.
  16. Linte CA, Camp JJ, Holmes DR III, Rettmann ME, Robb RA. Modeling of radio-frequency ablation lesions for image-guided left atrial arrhythmia therapy: an ex vivo demonstration and validation study Annals Biomed Eng. 2013 Jan.
  17. Linte CA, Camp JJ, Holmes DR 3rd, Rettmann ME, Robb RA. Toward online modeling for lesion visualization and monitoring in cardiac ablation therapy. Med Image Comput Comput Assist Interv. 2013; 16(Pt 1):9-17.
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  18. Linte CA, Camp JJ, Holmes DR 3rd, Rettmann ME, Packer DL, Robb RA. Toward modeling of radio-frequency ablation lesions for image-guided left atrial fibrillation therapy: model formulation and preliminary evaluation. Stud Health Technol Inform. 2013; 184:261-7.
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  19. Linte CA, Camp JJ, Rettmann ME, Holmes DR III, Robb RA. Image-based modeling and characterization of RF ablation lesions in cardiac arrhythmia therapy. Proceedings of SPIE - The International Society for Optical Engineering. 2013; 8671:86710E.
  20. Breighner R, Holmes DR III, Leng S, An KN, McCollough C, Zhao K. 3D-3D Registration of partial capitate bones using spin-images. Proceedings of SPIE - The International Society for Optical Engineering. 2013; 8671:867113.
  21. Rettmann ME, Stephens T, Holmes DR III, Linte C, Packer DL, Robb RA. Segmentation of left atrial intracardiac ultrasound images for image guided cardiac ablation therapy. Proceedings of SPIE - The International Society for Optical Engineering. 2013; 8671:86712D.
  22. Linte CA, Camp JJ, Holmes DR III, Rettmann ME, Robb RA. Modeling of radiofrequency ablation lesions for image-guided arrhythmia Augmented Environments for Computer-Assisted Interventions, Lecture Notes in Computer Science. 2013; 7815:22-33.
  23. Linte CA, Chen ECS, Berger MO, Moore JT, Holmes DR III. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics): Preface. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 2013; 7815 LNCS:V-VII.
  24. Rettmann ME, Gunawan MS, Holmes DR 3rd, Breen JF, Packer DL, Robb RA, CABANA Pilot Imaging Investigators. Centerline tracking for quantification of reverse structural remodeling of the pulmonary veins following cardiac ablation therapy. Acad Radiol. 2012 Nov; 19(11):1332-44. Epub 2012 Aug 11.
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  25. Hogan MC, Masyuk TV, Page L, Holmes DR 3rd, Li X, Bergstralh EJ, Irazabal MV, Kim B, King BF, Glockner JF, Larusso NF, Torres VE. Somatostatin analog therapy for severe polycystic liver disease: results after 2 years. Nephrol Dial Transplant. 2012 Sep; 27(9):3532-9. Epub 2012 Jul 06.
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  26. Miyabara Y, Holmes D 3rd, Camp J, Miller VM, Kearns AE. Comparison of calibrated and uncalibrated bone mineral density by CT to DEXA in menopausal women. Climacteric. 2012 Aug; 15(4):374-81. Epub 2011 Dec 17.
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  27. Ehman EC, Guimaraes LS, Fidler JL, Takahashi N, Ramirez-Giraldo JC, Yu L, Manduca A, Huprich JE, McCollough CH, Holmes D 3rd, Harmsen WS, Fletcher JG. Noise reduction to decrease radiation dose and improve conspicuity of hepatic lesions at contrast-enhanced 80-kV hepatic CT using projection space denoising. AJR Am J Roentgenol. 2012 Feb; 198(2):405-11.
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  28. Linte CA, Lang P, Rettmann ME, Cho DS, Holmes DR 3rd, Robb RA, Peters TM. Accuracy considerations in image-guided cardiac interventions: experience and lessons learned. Int J Comput Assist Radiol Surg. 2012 Jan; 7(1):13-25. Epub 2011 Jun 14.
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  29. Rettmann ME, Holmes DR III, Gunawan MS, Ge X, Karwoski RA, Breen JF, Packer DL, Robb RA. Validation of geometric measurements of the left atrium and pulmonary veins for analysis of reverse structural remodeling following ablation therapy. Progress in Biomedical Optics and Imaging - Proceedings of SPIE. 2012; 8317:831724.
  30. Linte CA, Rettmann ME, Dilger B, Gunawan MS, Arunachalam SP, Holmes DR III, Packer DL, Robb RA. Calibration and evaluation of a magnetically tracked ICE probe for guidance of left atrial ablation therapy. Progress in Biomedical Optics and Imaging - Proceedings of SPIE. 2012; 8316:83162P.
  31. Holmes DR III, Wong KH. Progress in Biomedical Optics and Imaging - Proceedings of SPIE: Introduction. Progress in Biomedical Optics and Imaging - Proceedings of SPIE. 2012; 8316:xxi-xxii.
  32. Linte CA, Davenport KP, Cleary K, Peters C, Vosburgh KG, Edwards P, Jannin P, Peters TM, Holmes Iii DR, Robb RA. Augmented environments for minimally invasive therapy: implementation barriers from technology to practice. Stud Health Technol Inform. 2012; 173:263-9.
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  33. Rettmann ME, Gunawan MS, Holmes DR III, Packer DL, Robb RA. Quantification of pulmonary vein morphology using centerline tracking. Proceedings - International Symposium on Biomedical Imaging. 2012; 816-9.
  34. Linte CA, Augustine KE, Huddleston PM, Stans AA, Holmes DR III, Robb RA. Enhanced planning of interventions for spinal deformity correction using virtual modeling and visualization techniques. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 2012; 7264 LNCS:93-105.
  35. Linte CA, Moore JT, Chen ECS, Holmes DR III. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics): Preface. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 2012; 7264 LNCS:V-VI.
  36. Miyabara Y, Camp J, Holmes D 3rd, Lahr B, Bailey K, Miller VM, Kearns AE. Coronary arterial calcification and thoracic spine mineral density in early menopause. Climacteric. 2011 Aug; 14(4):438-44. Epub 2011 Jan 25.
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  37. Liu J, Rettmann ME, Holmes DR 3rd, Duan H, Robb RA. A piecewise patch-to-model matching method for image-guided cardiac catheter ablation. Comput Med Imaging Graph. 2011 Jun; 35(4):324-32. Epub 2011 Mar 03.
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  38. Apel A, Fletcher JG, Fidler JL, Hough DM, Yu L, Guimaraes LS, Bellemann ME, McCollough CH, Holmes DR 3rd, Eusemann CD. Pilot multi-reader study demonstrating potential for dose reduction in dual energy hepatic CT using non-linear blending of mixed kV image datasets. Eur Radiol. 2011 Mar; 21(3):644-52. Epub 2010 Sep 29.
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  39. Cameron BM, Rettmann ME, Holmes DR III, Robb RA. Fast adaptation of pre-operative patient specific models to real-time intra-operative volumetric data streams. Medicine Meets Virtual Reality (MMVR). 2011 Jan.
  40. Rettmann ME, Holmes DR III, Packer DL, Robb RA. Incorporating a Gaussian model at the catheter tip for improved registration of preoperative surface models. Progress in Biomedical Optics and Imaging - Proceedings of SPIE. 2011; 7964:796411.
  41. Kwartowitz DM, Riti RE, Holmes DR III. Expansion and dissemination of "A standardized accuracy and precision assessment technique". Progress in Biomedical Optics and Imaging - Proceedings of SPIE. 2011; 7964:79642B.
  42. Cameron BM, Rettmann ME, Holmes DR 3rd, Robb RA. Fast adaptation of pre-operative patient specific models to real-time intra-operative volumetric data streams. Stud Health Technol Inform. 2011; 163:99-104.
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  43. Guimaraes LS, Fletcher JG, Yu L, Huprich JE, Fidler JL, Manduca A, Ramirez-Giraldo JC, Holmes DR Jr, McCollough CH. Feasibility of dose reduction using novel denoising techniques for low kV (80 kV) CT enterography: optimization and validation. Acad Radiol. 2010 Oct; 17(10):1203-10.
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  44. Hogan MC, Masyuk TV, Page LJ, Kubly VJ, Bergstralh EJ, Li X, Kim B, King BF, Glockner J, Holmes DR 3rd, Rossetti S, Harris PC, LaRusso NF, Torres VE. Randomized clinical trial of long-acting somatostatin for autosomal dominant polycystic kidney and liver disease. J Am Soc Nephrol. 2010 Jun; 21(6):1052-61. Epub 2010 Apr 29.
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  45. Kwartowitz DM, Rettmann ME, Holmes DR III, Robb RA. A novel technique for analysis of accuracy of magnetic tracking systems used in image guided surgery. SPIE Medical Imaging. 2010.
  46. Augustine KE, Stans AA, Morris JM, Huddleston PM, Matsumoto JM, Holmes III DR, Robb RA. Plan to procedure: combining 3D templating with rapid prototyping to enhance pedicle screw placement. Imaging. 2010.
  47. Smelyanskiy M, Holmes D, Chhugani J, Larson A, Carmean DM, Hanson D, Dubey P, Augustine K, Kim D, Kyker A, Lee VW, Nguyen AD, Seiler L, Robb R. Mapping high-fidelity volume rendering for medical imaging to CPU, GPU and many-core architectures. IEEE Trans Vis Comput Graph. 2009 Nov-Dec; 15(6):1563-70.
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  48. Rettmann ME, Holmes DR 3rd, Cameron BM, Robb RA. An event-driven distributed processing architecture for image-guided cardiac ablation therapy. Comput Methods Programs Biomed. 2009 Aug; 95(2):95-104. Epub 2009 Mar 13.
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  49. Holmes DR III, Apel A, Fletcher JG, Guimaraes LS, Eusemann CE, Robb RA. Evaluating optimal CNR as a preset criteria for nonlinear moidal blending of dual energy CT data SPIE Medical Imaging. 2009.
  50. Holmes DR 3rd, Fletcher JG, Apel A, Huprich JE, Siddiki H, Hough DM, Schmidt B, Flohr TG, Robb R, McCollough C, Wittmer M, Eusemann C. Evaluation of non-linear blending in dual-energy computed tomography. Eur J Radiol. 2008 Dec; 68(3):409-13. Epub 2008 Nov 05.
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  51. Konig A, Margolis MP, Virmani R, Holmes D, Klauss V, Medscape. Technology insight: in vivo coronary plaque classification by intravascular ultrasonography radiofrequency analysis. Nat Clin Pract Cardiovasc Med. 2008 Apr; 5(4):219-29. Epub 2008 Feb 26.
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  52. Cameron BM, Holmes DR III, Rettmann ME, Robb RA. Patient specific physical anatomy models. Medicine Meets Virtual Reality (MMVR). 2008 Jan.
  53. Cameron BM, Holmes DR 3rd, Rettmann ME, Robb RA. Patient specific physical anatomy models. Stud Health Technol Inform. 2008; 132:68-73.
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  54. Augustine KE, Huddleston PM, Holmes DR III, Shridharani SM, Robb RA. Optimization of spine surgery planning with 3D image templating tools Medical Imaging. 2008.
  55. Rettmann ME, Holmes DR III, Cameron BM, Robb RA. Interactive Visualization of Cardiac Anatomy in Catheter-Based Ablation Therapy. Medical Image Computing and Computer-Assisted Interventions (MICCAI) workshop on Interaction in Medical Image Analysis and Visualization. 2007 Nov.
  56. Eusemann CD, Sammons BE, Holmes DR 3rd, Brady TJ, Erenburg I, Toneguzzo F. Academic technology transfer and radiology: a strong partnership for the future. Acad Radiol. 2007 Nov; 14(11):1289-95.
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  57. Holmes DR III, Robb RA. Data, Data Everywhere, nor an Image to Read. Insight Software Journal. 2007 Oct.
  58. Holmes DR, Davis BJ, Hangiandreou NJ, Kinnick RR, Wilson TM, Mynderse LA, Robb RA. Design and testing of a custom transurethral ultrasound device with rapid 3D reconstruction using a rotational scanner. Brachytherapy. 2007 Apr-Jun; 6(2):94.
  59. Holmes DR III, Rettmann ME, Cameron BM, Camp JJ, Robb RA. Virtual cardioscopy: Interactive endocardial visualization to guide RF cardiac ablation. Proc SPIE-Medical Imaging. 2006 Feb 11-16.
  60. Rettmann ME, Holmes DR III, Su Y, Cameron BM, Packer DL, Robb RA. An Integrated system for real-time image guided cardiac catheter ablation. Medicine Meets Virtual Reality (MMVR). 2006 Jan.
  61. Augustine KE, Holmes DR III, Hanson DP, Robb RA. Comprehensive, powerful, efficient intuitive: A new framework for clinical imaging applications. Proc SPIE -- Medical Imaging. 2006 San Diego, California. 2006; Feb 11-16.
  62. Su Y, Holmes DR III, Rettmann ME, Robb RA. A piecewise function-to-structural registration algorithm for image guided cardiac catheter ablation. Proc SPIE -- Medical Imaging. 2006, San Diego, California. 2006; Feb 11-16.
  63. Redwood A, Holmes DR III, Yang E, Lerman A, Robb RA. Using ChromaFlo intra-vascular ultrasound (IVUS) to analyze adventitial vasa vasorum distribution: Considerations and recommendations. Proc SPIE -- Medical Imaging. 2006, San Diego, California. 2006 Feb; 11-16.
  64. Holmes DR III, Robb RA. Volumetric CT measurement of the ischial tuberosities for designing analytical models of decubitus uclers. Proc SPIE -- Medical Imaging 2005, San Diego, California. 2006; Feb 11-16.
  65. Rettmann ME, Holmes DR III, Su Y, Kolasa MW, Packer DL, Robb RA. Evaluation of global versus piecewise registration using a ground truth canine model. Proc IEEE -- International Symposium on Biomedical Imaging: From Nano to Macro, Arlington, Virginia. 2006; April 6-9.
  66. Rettmann ME, Holmes DR 3rd, Su Y, Cameron BM, Camp JJ, Packer DL, Robb RA. An integrated system for real-time image guided cardiac catheter ablation. Stud Health Technol Inform. 2006; 119:455-60.
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  67. Haider CR, Bartholmai BJ, Holmes DR, Camp JJ, Robb RA. Quantitative characterization of lung disease. Computerized Medical Imaging & Graphics. 2005 Oct; 29(7):555-63.
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  68. Holmes DR III, Workman EL, Robb RA. The NLM-Mayo Image Collection: Common Access to Uncommon Data. Insight Software Journal. 2005 Oct.
  69. Holmes DR III, Welch EB, Philpott RA, Coker JD, Schaefer TM, Gilbert BK, Daniel ES. Asynchronous spread spectrum communication for a micro-miniature transponder: implementation and test results. Proceedings of SPIE, The International Society for Optical Engineering. 2005 Mar; 5819:231-6.
  70. Holmes DR III, Workman EL, Robb RA. The NLM-Mayo image collection: Common access to uncommon data. Medical Image Computing & Computer Assisted Intervention. 2005, Palm Springs, California, IN: ISC/NA-MIC/MICCAI Workshop on Open Source Software. 2005.
  71. Techentin RW, Holmes DR, Gilbert BK, Daniel ES. Real-time code distribution on a heterogeneous network for laboratory equipment control. Proceedings of the Eleventh Annual Tcl/Tk Conference. 2004 Oct:11-7.
  72. Holmes DR, Davis BJ, Bruce CJ, Robb RA. 3D visualization, analysis, and treatment of the prostate using trans-urethral ultrasound. Computerized Medical Imaging & Graphics. 2003 Sep-Oct; 27(5):339-49.
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  73. Holmes DR III, Davis BJ, Robb RA. Trans-urethral ultrasound: A new tool for diagnostic and therapeutic imaging in prostate cancer. Proc Of Medical Image Computing and Computer-Assisted Intervention - MICCAI 2001 Utrecht The Netherlands. 2001; 2208:1243-4.
  74. Holmes DR 3rd, Davis BJ, Robb RA. 3D localization of implanted radioactive sources in the prostate using trans-urethral ultrasound. Stud Health Technol Inform. 2001; 81:199-205.
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  75. Holmes DR 3rd, Robb R. Trans-urethral ultrasound (TUUS) imaging for visualization and analysis of the prostate and associated tissues. Stud Health Technol Inform. 2000; 70:126-32.
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  76. Holmes DR III, Robb RA. Trans-urethral ultrasound (TUUS) imaging for visualization and analysis of the prostate and associated tissues. Proc. SPIE – Medical Imaging. 2000: Image Display and Visualization, 2000; 3976:22-7.
  77. Holmes DR III, Robb RA. Quantitative image analysis of histological sections of coronary arteries. Proc. SPIE – Medical Imaging. 2000: Image Processing, 2000; 3979:1303-8.
  78. Holmes DR III, Robb RA. 3D trans-urethral ultrasound: a new view of the prostate gland. Proceedings of Computer Assisted Radiology and Surgery (CARS. 2000), Eds.: H.U. Lemke, M.W. Vannier, K. Inamura, A.G. Farnham, K. Doi, Elsevier Science, Amsterdam, 2000; 1214:1034.
  79. Holmes D III, Robb RA. Processing, segmentation, and visualization of pre- and post-stent coronary arteries using intra-vascular ultrasound. Proc. SPIE Medical Imaging '98 San Diego, California. 1998 Feb; 3335:72-82.
  80. Holmes DR Jr, Bell MR, Holmes DR 3rd, Berger PB, Bresnahan JF, Hammes LN, Grill DE, Garratt KN. Interventional cardiology and intracoronary stents--a changing practice: approved vs. nonapproved indications. Cathet Cardiovasc Diagn. 1997 Feb; 40(2):133-8.
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  81. Holmes DR III, Camp JJ, Robb RA. Evaluation of search strategies and cost functions in optimizing voxel-based image registration. Proc SPIE - The International Society for Optical Engineering pp 554-562 1997; vol. 3031.