Identification of Risk Factor Specific Genetic Alterations in Renal Cell Carcinoma

Incidence and mortality rates for renal cell carcinoma (RCC) have increased steadily over the past three decades, and these trends are largely unexplained. While it is widely acknowledged that obesity and smoking increase the risk of developing RCC, little is known regarding the actual biologic mechanisms that underlie these associations. Indeed, the Kidney Cancer Progress Review Group recently recommended that investigators focus efforts on illuminating the "biological mechanisms underlying the known risk factors for kidney cancers".

Identification of risk factor specific genetic alterations in renal cell carinoma

A logical first approach to identifying specific molecular alterations that link obesity and smoking with RCC development would be to compare the somatic gene expression profiles in tumors from RCC patients with and without a history of these particular risk factors. We currently have two grants (one funded by NIH and the other by the State of Florida) to employ the high throughput capabilities of commercially available DNA microarray technology in order to scan the genome for genes that are differentially expressed in RCC tumors that develop in individuals who smoke or are obese. To do this, we will use the Mayo Renal Mass Registry to identify patients with a history of the particular risk factor of interest and a similar set of patients without that risk factor. We will then request fresh-frozen tissue samples (both tumor and normal) on each individual and use laser capture microdissection to obtain samples for RNA extraction. The Mayo Clinic DNA Microarray Core Facility will conduct measurements of gene expression in the sampled tissues using the Affymetrix U133A GeneChip platform. Members of our investigative team with experience in microarray analysis and bioinformatics will then conduct analysis to determine differential gene expression patterns between the study groups. Explicitly, we wish to test the hypothesis that specific gene expression profiles can be identified that will distinguish between RCC tumors that develop in obese and smoking individuals. Below is a schematic describing the concept of the study using obesity as the risk factor of interest.

Identification of risk factor specific genetic alterations in renal cell carinoma

Results from this study will provide direction and support for larger, more candidate-specific investigations of the biologic mechanisms behind the obesity/RCC association. In summary, these projects represents an effort to harness an innovative, high throughput laboratory technology in order to improve our understanding of RCC etiology by broadening the search for risk-factor-specific molecular heterogeneity in human RCC. The long-term goal of the proposed study is to potentially inform novel prevention and treatment strategies for RCC at both the individual and population level.