Brief Description:
Tests for the fit of genotype frequencies to Hardy-Weinberg
Equilibrium proportions. Different statistical tests are provided,
as well as an option to evaluate statistical significance by
simulations.
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Installation procedures for hwe
Intallation procedures in this file are for setting up a 'local
library' for a user. If a large group of users plan to use the same
library, then install on a system-wide 'library' location designated
by a system administrator.
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S-PLUS Installation
The hwe S-PLUS functions are written for S-PLUS version 7.0.6
To install the software for local use in S-PLUS, move
hwe_x.y.z_S.tar.gz to your installation directory and follow
the series of commands:
1) gunzip hwe_x.y.z_S.tar.gz
2) tar -xvf hwe_x.y.z_S.tar
3) cd hwe/src
4) Splus CHAPTER -m
5) Splus make -f makefile.hwe
Note that the package is not available as an R-like package for S-PLUS
8.0.1 or later. Follow the above instructions for installation to S-PLUS 8, but we
recommend version 8.0.4 or later.
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R Installation
The hwe package is not available for distribution through any
R websites. To install, download the README.hwe file with
hwe_x.y.z.tar.gz and execute the following command with the local
"INSTALL LIBRARY DIR PATH" correctly specified.
R CMD INSTALL -l /INSTALL LIBRARY DIR PATH/ hwe_x.y.z.tar.gz
Additional details on R may be found on the R project website
(http://www.r-project.org).
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User Documenation:
Please find specific instructions in the help files for the hwe
functions, for example by typing help(hwe) at the R or S-PLUS prompt.