Publications

  1. Schulz S, Rodrigues JM, Rector A, Spackman K, Campbell J, Ustun B, Chute CG, Solbrig H, Della Mea V, Millar J, Brand Persson K. What's in a Class? Lessons Learnt from the ICD - SNOMED CT Harmonisation. Stud Health Technol Inform. 2014; 205:1038-42.
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  2. Solbrig H, Prud'Hommeaux E, Chute CG, Davies J. A formal model for RDF dataset constraints. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 2014; 8388 LNCS:244-60.
  3. Rodrigues JM, Schulz S, Rector A, Spackman K, Millar J, Campbell J, Ustun B, Chute CG, Solbrig H, Della Mea V, Persson KB. ICD-11 and SNOMED CT Common Ontology: Circulatory System. Stud Health Technol Inform. 2014; 205:1043-7.
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  4. Pathak J, Bailey KR, Beebe CE, Bethard S, Carrell DC, Chen PJ, Dligach D, Endle CM, Hart LA, Haug PJ, Huff SM, Kaggal VC, Li D, Liu H, Marchant K, Masanz J, Miller T, Oniki TA, Palmer M, Peterson KJ, Rea S, Savova GK, Stancl CR, Sohn S, Solbrig HR, Normalization and standardization of electronic health records for high-throughput phenotyping: the SHARPn consortium. J Am Med Inform Assoc. 2013 Dec; 20(e2):e341-8. Epub 2013 Nov 04.
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  5. Tao C, Pathak J, Solbrig HR, Wei WQ, Chute CG. Terminology representation guidelines for biomedical ontologies in the semantic web notations. J Biomed Inform. 2013 Feb; 46(1):128-38. Epub 2012 Sep 28.
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  6. Jiang G, Liu H, Solbrig HR, Chute CG. ADEpedia 2.0: Integration of Normalized Adverse Drug Events (ADEs) Knowledge from the UMLS. AMIA Jt Summits Transl Sci Proc. 2013; 2013:100-4. Epub 2013 Mar 18.
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  7. Campbell JR, Brear H, Scichilone R, White S, Giannangelo K, Carlsen B, Solbrig H, Fung KW. Semantic interoperation and electronic health records: Context sensitive mapping from SNOMED CT to ICD-10. Stud Health Technol Inform. 2013; 192(1-2):603-7.
  8. Jiang G, Solbrig HR, Chute CG. Using Semantic Web technology to support icd-11 textual definitions authoring. J Biomed Semantics. 2013; 4(1):11. Epub 2013 Apr 21.
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  9. Jiang G, Wang L, Liu H, Solbrig HR, Chute CG. Building a knowledge base of severe adverse drug events based on AERS reporting data using semantic web technologies. Stud Health Technol Inform. 2013; 192:496-500.
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  10. Jiang G, Solbrig HR, Chute CG. Quality evaluation of value sets from cancer study common data elements using the UMLS semantic groups. J Am Med Inform Assoc. 2012 Jun; 19(e1):e129-36. Epub 2012 Apr 17.
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  11. Tao C, Noy NF, Solbrig HR, Shah NH, Musen MA, Chute CG. Proposed SKOS extensions for bioportal terminology services. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 2012; 7185 LNCS:342-9.
  12. Jiang G, Solbrig HR, Chute CG. Using semantic web technology to support ICD-11 textual definitions authoring. ACM International Conference Proceeding Series. 2012; 38-44.
  13. Jiang G, Solbrig HR, Chute CG. Quality evaluation of cancer study Common Data Elements using the UMLS Semantic Network. J Biomed Inform. 2011 Dec; 44 Suppl 1:S78-85. Epub 2011 Aug 05.
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  14. Jiang G, Solbrig HR, Chute CG. ADEpedia: a scalable and standardized knowledge base of Adverse Drug Events using semantic web technology. AMIA Annu Symp Proc. 2011; 2011:607-16. Epub 2011 Oct 22.
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  15. Tao C, Solbrig HR, Chute CG. CNTRO 2.0: A Harmonized Semantic Web Ontology for Temporal Relation Inferencing in Clinical Narratives. AMIA Jt Summits Transl Sci Proc. 2011; 2011:64-8. Epub 2011 Mar 07.
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  16. Tao C, Jiang G, Wei W, Solbrig HR, Chute CG. Towards Semantic-Web Based Representation and Harmonization of Standard Meta-data Models for Clinical Studies. AMIA Jt Summits Transl Sci Proc. 2011; 2011:59-63. Epub 2011 Mar 07.
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  17. Jiang G, Solbrig HR, Chalmers RJG, Spackman K, Rector AL, Chute CG. A case study of ICD-11 anatomy value set extraction from SNOMED CT. CEUR Workshop Proceedings. 2011; 833:133-8.
  18. Jiang G, Solbrig HR, Chute CG. Mash-up of lexwiki and web-protg for distributed authoring of large-scale biomedical terminologies. CEUR Workshop Proceedings. 2010; 754.
  19. Tao C, Solbrig HR, Sharma DK, Wei WQ, Savova GK, Chute CG. Time-Oriented Question Answering from Clinical Narratives Using Semantic-Web Techniques. Lect Notes Comput Sci. 2010; 6497:241-56.
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  20. Tao C, Wei WQ, Solbrig HR, Savova G, Chute CG. CNTRO: A Semantic Web Ontology for Temporal Relation Inferencing in Clinical Narratives. AMIA Annu Symp Proc. 2010; 2010:787-91. Epub 2010 Nov 13.
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  21. Jiang G, Solbrig HR, Iberson-Hurst D, Kush RD, Chute CG. A Collaborative Framework for Representation and Harmonization of Clinical Study Data Elements Using Semantic MediaWiki. AMIA Summits Transl Sci Proc. 2010; 2010:11-5. Epub 2010 Mar 01.
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  22. Tao C, Pathak J, Solbrig HR, Wei WQ, Chute CG. LexRDF Model: An RDF-based Unified Model for Heterogeneous Biomedical Ontologies. CEUR Workshop Proc. 2009 Oct 26; 521:3.
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  23. Pathak J, Solbrig HR, Buntrock JD, Johnson TM, Chute CG. LexGrid: a framework for representing, storing, and querying biomedical terminologies from simple to sublime. J Am Med Inform Assoc. 2009 May-Jun; 16(3):305-15. Epub 2009 Mar 04.
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  24. McCarthy JL, Warzel D, Kendall E, Bargmeyer B, Solbrig H, Keck K, Gey F. Data modeling and harmonization with OWL: Opportunities and lessons learned. CEUR Workshop Proceedings. 2009; 524:86-97.
  25. Rubin DL, Lewis SE, Mungall CJ, Misra S, Westerfield M, Ashburner M, Sim I, Chute CG, Solbrig H, Storey MA, Smith B, Day-Richter J, Noy NF, Musen MA. National Center for Biomedical Ontology: advancing biomedicine through structured organization of scientific knowledge. OMICS. 2006 Summer; 10(2):185-98.
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  26. Supekar K, Chute CG, Solbrig H. Representing lexical components of medical terminologies in OWL. AMIA . Annual Symposium Proceedings/AMIA Symposium. 2005; 719-23.
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  27. Tu SW, Musen MA, Shankar R, Campbell J, Hrabak K, McClay J, Huff SM, McClure R, Parker C, Rocha R, Abarbanel R, Beard N, Glasgow J, Mansfield G, Ram P, Ye Q, Mays E, Weida T, Chute CG, McDonald K, Mohr D, Nyman MA, Scheitel S, Solbrig H, Zill DA, Modeling guidelines for integration into clinical workflow. Medinfo. 2004; 2004:174-8.
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  28. Solbrig HR, Chute CG. Terminology access methods leveraging LDAP resources. Medinfo. 2004; 11(Pt 1):545-9.
  29. Solbrig HR, Armbrust DC, Chute CG. The Open Terminology Services (OTS) project. AMIA Annu Symp Proc. 2003; 1011.
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  30. Ruggieri AP, Elkin PL, Solbrig H, Chute CG. Expression of a domain ontology model in unified modeling language for the World Health Organization International classification of impairment, disability, and handicap, version 2. Proc AMIA Symp. 2001; 573-7.
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  31. Harris MR, Graves JR, Solbrig HR, Elkin PL, Chute CG. Embedded structures and representation of nursing knowledge. J Am Med Inform Assoc. 2000 Nov-Dec; 7(6):539-49.
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  32. Solbrig HR. Metadata and the reintegration of clinical information: ISO 11179. MD Comput. 2000 May-Jun; 17(3):25-8.
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  33. Solbrig HR, Elkin PL, Ogren PV, Chute CG. A formal approach to integrating synonyms with a reference terminology. Proc AMIA Symp. 2000; 814-8.
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  34. Elkin PL, Harris MR, Ogren PV, Buntrock JD, Brown SH, Solbrig HR, Chute CG. Semantic augmentation of description logic based terminologies. Proceedings, IMIA Working Group 6 Conference. 1999.
  35. Chute CG, Solbrig HR, Elkin PL. Terminology services as software components: an architecture and preliminary efforts. Proceedings, IMIA Working Group 6 Conference. 1999.
  36. Huff SM, Rocha RA, Solbrig HR, Barnes MW, Schrank SP, Smith M. Linking a medical vocabulary to a clinical data model using Abstract Syntax Notation 1. Methods of Information in Medicine. 1998; 37(4-5):440-52.
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  37. Solbrig HR. Distributed Object Technology, Legacy Systems and the OMG. Proceedings of TEPR '98 1998.
  38. Solbrig HR, Smith M. ASN.1/C++ Application Programming Interface. Generic Interface, Network Management Forum. 1997 Jul; Part 2(1).
  39. Solbrig HR. LUCID  Language for Users Clinical Information Display. Technical Specification. 1979.