Publications

1. Pathak J, Solbrig HR, Buntrock JD, Johnson TM, Chute CG. LexGrid: a framework for representing, storing, and querying biomedical terminologies from simple to sublime. J Am Med Inform Assoc. 2009 May-Jun; 16(3):305-15. Epub 2009 Mar 04. 1929751
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2. Savova GK, Ogren PV, Duffy PH, Buntrock JD, Chute CG. Mayo clinic NLP system for patient smoking status identification. J Am Med Inform Assoc. 2008 Jan-Feb; 15(1):25-8. Epub 2007 Oct 18. 1859162
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3. Pathak J, Jiang G, Dwarkanath SO, Buntrock JD, Chute CG. LexValueSets: an approach for context-driven value sets extraction. AMIA Annu Symp Proc. 2008; 556-60. Epub 2008 Nov 06. 1915398
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4. Savova G, Ogren P, Duffy P, Buntrock J, Chute C. Mayo Clinic NLP System for patient smoking status identification. I2b2 Workshop on Challenges in Natural Language Processing for Clinical Data. Washington, DC. 2006 Nov 10-11. 1929708
   
5. Pakhomov SV, Buntrock JD, Chute CG. Automating the assignment of diagnosis codes to patient encounters using example-based and machine learning techniques. J Am Med Inform Assoc. 2006 Sep-Oct; 13(5):516-25. Epub 2006 Jun 23. 1782532
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6. Ogren PV, Savova G, Buntrock JD, Chute CG. Building and evaluating annotated corpora for medical NLP systems. AMIA Annu Symp Proc. 2006; 1050. 1799703
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7. Pakhomov SV, Buntrock J, Chute CG. Prospective recruitment of patients with congestive heart failure using an ad-hoc binary classifier. J Biomed Inform. 2005 Apr; 38(2):145-53. 1703829
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8. Pakhomov S, Buntrock J, Duffy P. High throughput modularized NLP system for clinical text. ACL-05 - 43rd Annual Meeting of the Association for Computational Linguistics, Proceedings of the Conference. 2005:25-8. 2242648
   
9. Pakhomov SV, Buntrock JD, Chute CG. Using compound codes for automatic classification of clinical diagnoses. Medinfo. 2004; 11(Pt 1):411-5. 1665758
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10. Buntrock JD, Chute CG. An evaluation of unmediated versus mediated retrieval services. Proc AMIA Symp. 2002; 81-5. 1977541
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11. Elkin PL, Ruggieri AP, Brown SH, Buntrock J, Bauer BA, Wahner-Roedler D, Litin SC, Beinborn J, Bailey KR, Bergstrom L. A randomized controlled trial of the accuracy of clinical record retrieval using SNOMED-RT as compared with ICD9-CM. Proc AMIA Symp. 2001; 159-63. 1314655
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12. Elkin PL, Harris MR, Ogren PV, Buntrock JD, Brown SH, Solbrig HR, Chute CG. Semantic augmentation of description logic based terminologies. Proceedings, IMIA Working Group 6 Conference. 1999. 1818102
    
13. Liu Q, Buntrock JD, Crowson DL, Tuttle MS, Elkin PL, Chute CG. A java-based interface for the medical research project classification using metaphrase JAMIA Symposium. 1998; Supplement:1037. 156208
    
14. Chute CG, Crowson DL, Buntrock JD. Medical information retrieval and WWW browsers at Mayo. Proc Annu Symp Comput Appl Med Care. 1995; 903-7. 1977600
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15. Chute CG, Yang Y, Buntrock J. An evaluation of computer assisted clinical classification algorithms. Proc Annu Symp Comput Appl Med Care. 1994; 162-6. 1977612
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